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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1220258 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03363496_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Exon 5
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 5 1317 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK000717.1
AK027277.1 BAB55012.1
AK055331.1 1 36
AK075352.1 BAC11563.1
AK126927.1 1 1094
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 SDF4 FAM132A B3GALT6
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MTND1P23 CALML6 PERM1 LINC00115 FAM41C ANKRD65 MIR200A MIR6726 LOC107984841 LOC100288175 PLEKHN1 MIR200B PRKCZ AURKAIP1 FNDC10 LOC100506504 LOC729737 SKI LOC105378589 ATAD3C LOC284600 UBE2J2 MMP23B LOC100287934 MORN1 MIR1302-2 SLC35E2B SSU72 OR4F29 DVL1 FAM132A HES4 SAMD11 ISG15 SCNN1D TNFRSF18 NOC2L LOC105378948 MTND2P28 CPSF3L SDF4 GABRD MIR429 MIR6723 ATAD3A ATAD3B LOC107985729 MIR6859-2 LOC101928626 MIR6808 LINC01342 LOC102724312 OR4F5 MMP23A LOC102725121 TAS1R3 FAM138A LINC01128 MIR6859-1 MIB2 GNB1 LOC105378949 CCNL2 TMEM88B C1orf159 VWA1 CFAP74 FAM87B ACAP3 NADK WASH7P LOC105378947 LOC148413 LOC100133331 CDK11A LOC100288069 LOC105378592 TTLL10-AS1 LOC100134822 LOC100132287 KLHL17 DDX11L1 FAAP20 OR4F16 TNFRSF4 CPTP B3GALT6 PUSL1 TTLL10 LOC100129534 RNF223 MIR6727 LOC100130417 TMEM240 TMEM52 LOC107985728 LOC105378591 AGRN MRPL20 SLC35E2 MXRA8 CDK11B
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain UBE2J2 RNF223 FAM132A C1orf159 SCNN1D TNFRSF18 LINC01342 LOC105378948 MIR200A SDF4 TNFRSF4 TTLL10-AS1 B3GALT6 MIR429 MIR200B TTLL10
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss UBE2J2 MIR6808 LINC01342 MIR200A MIR6726 TAS1R3 TNFRSF4 CPTP B3GALT6 PUSL1 MIR200B TTLL10 DVL1 RNF223 MIR6727 FAM132A C1orf159 AURKAIP1 SCNN1D ACAP3 TNFRSF18 CPSF3L SDF4 TTLL10-AS1 MIR429 MXRA8
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss SDF4 TNFRSF4 TTLL10-AS1 B3GALT6 TNFRSF18 TTLL10
nsv159887 Chr.1:1217713 - 1222580 on Build GRCh38 Deletion SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication UBE2J2 LINC01342 MIR200A MIR6726 TAS1R3 TNFRSF4 CPTP LOC100288175 B3GALT6 PUSL1 MIR200B TTLL10 RNF223 MIR6727 FAM132A C1orf159 SCNN1D ACAP3 TNFRSF18 LOC105378948 AGRN CPSF3L SDF4 TTLL10-AS1 MIR429
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PERM1 FAM41C LINC01342 MIR200A TNFRSF4 LOC100288175 PLEKHN1 MIR200B TTLL10 RNF223 HES4 C1orf159 SAMD11 LOC100130417 ISG15 LOC107985728 TNFRSF18 NOC2L LOC105378948 AGRN SDF4 TTLL10-AS1 LOC284600 MIR429 KLHL17
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss ATAD3B LOC107985729 MIR6808 PERM1 LINC00115 FAM41C LINC01342 ANKRD65 LOC102724312 MIR200A MMP23A MIR6726 TAS1R3 LOC100288175 LINC01128 PLEKHN1 MIR200B MIB2 CCNL2 TMEM88B C1orf159 VWA1 FAM87B AURKAIP1 FNDC10 ACAP3 NADK LOC148413 CDK11A LOC100288069 TTLL10-AS1 ATAD3C LOC284600 KLHL17 UBE2J2 MMP23B LOC100287934 TNFRSF4 CPTP SLC35E2B B3GALT6 SSU72 PUSL1 TTLL10 DVL1 RNF223 MIR6727 FAM132A HES4 SAMD11 LOC100130417 TMEM240 ISG15 SCNN1D LOC107985728 TNFRSF18 NOC2L LOC105378948 AGRN CPSF3L SDF4 MRPL20 SLC35E2 MIR429 MXRA8 ATAD3A CDK11B
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion UBE2J2 ATAD3B LOC107985729 MIR6808 MMP23B LINC01342 ANKRD65 LOC102724312 MIR200A MIR6726 TAS1R3 TNFRSF4 CPTP B3GALT6 SSU72 PUSL1 MIR200B MIB2 TTLL10 DVL1 MIR6727 CCNL2 FAM132A TMEM88B C1orf159 VWA1 TMEM240 AURKAIP1 SCNN1D FNDC10 ACAP3 TNFRSF18 CPSF3L LOC148413 SDF4 MRPL20 TTLL10-AS1 ATAD3C MIR429 MXRA8 ATAD3A CDK11B
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss UBE2J2 PERM1 LINC00115 FAM41C LINC01342 MIR200A TNFRSF4 LOC100288175 LINC01128 B3GALT6 PLEKHN1 MIR200B TTLL10 RNF223 FAM132A HES4 C1orf159 SAMD11 LOC100130417 FAM87B ISG15 LOC107985728 TNFRSF18 NOC2L LOC105378948 AGRN SDF4 TTLL10-AS1 LOC284600 MIR429 KLHL17
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion RNF223 HES4 C1orf159 SAMD11 PERM1 ISG15 TNFRSF18 LINC01342 NOC2L LOC105378948 MIR200A AGRN SDF4 TNFRSF4 TTLL10-AS1 LOC100288175 MIR429 KLHL17 PLEKHN1 MIR200B TTLL10
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain UBE2J2 MIR6808 PERM1 LINC01342 ANKRD65 MIR200A MIR6726 TAS1R3 TNFRSF4 CPTP LOC100288175 B3GALT6 PUSL1 PLEKHN1 MIR200B TTLL10 DVL1 RNF223 MIR6727 CCNL2 FAM132A TMEM88B HES4 C1orf159 SAMD11 LOC100130417 ISG15 AURKAIP1 SCNN1D LOC107985728 ACAP3 TNFRSF18 NOC2L LOC105378948 AGRN CPSF3L LOC148413 SDF4 MRPL20 TTLL10-AS1 LOC284600 MIR429 KLHL17 MXRA8
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain UBE2J2 MIR6727 FAM132A SCNN1D ACAP3 TNFRSF18 MIR200A CPSF3L SDF4 MIR6726 TNFRSF4 TTLL10-AS1 B3GALT6 MIR429 PUSL1 MIR200B TTLL10

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