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Gene Symbol
NOC2L
Assay Reference Genome
Location

Chr.1:951680 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03368294_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 26155

Gene Name:

 NOC2 like nucleolar associated transcriptional repressor

Gene Aliases:

 NET15, NET7, NIR, PPP1R112

Location:

 Chr.1:944203-959299 on Build GRCh38

Assay Gene Location:

 Within Intron 11
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
NOC2L NM_015658.3 NP_056473.2
AK022756.1 BAB14230.1
AK024284.1
AK225239.1
AK315080.1
AL050019.1 CAB43240.2
AW749585.1
BC003555.1 AAH03555.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain KLHL17 LOC284600 LOC105378948 LOC107985728 PLEKHN1 NOC2L RNF223 LOC100288175 PERM1 LOC100130417 AGRN C1orf159 HES4 ISG15 SAMD11
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC284600 MORN1 GNB1 LOC100134822 RNF223 UBE2J2 FAM138A FNDC10 CALML6 FAM132A SKI C1orf159 SAMD11 LOC102724312 TMEM52 LOC100129534 TTLL10 LOC105378948 TTLL10-AS1 TNFRSF18 MIR6727 LOC105378589 NOC2L CDK11A MMP23B CFAP74 LOC100132287 DVL1 LOC148413 LINC00115 LOC100506504 CPTP MRPL20 ATAD3A OR4F5 PUSL1 PERM1 SCNN1D TNFRSF4 ANKRD65 LOC101928626 LOC105378591 MTND2P28 FAM87B VWA1 TMEM240 FAAP20 LOC729737 MXRA8 MIR200B SDF4 MIR6859-1 HES4 MIR1302-2 AURKAIP1 MTND1P23 SLC35E2 WASH7P MIR6726 CPSF3L OR4F29 LOC107984841 SSU72 ISG15 B3GALT6 KLHL17 ATAD3C LINC01128 MIR6808 LOC107985728 PLEKHN1 PRKCZ OR4F16 ATAD3B TAS1R3 TMEM88B CCNL2 LOC100133331 DDX11L1 SLC35E2B LOC100288069 NADK MIR6859-2 MMP23A CDK11B ACAP3 LOC100130417 LOC102725121 MIR429 LOC105378592 MIR6723 MIR200A LOC100287934 MIB2 LOC105378949 LOC100288175 FAM41C LINC01342 AGRN LOC105378947 GABRD LOC107985729
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion KLHL17 LOC284600 LOC105378948 LOC107985728 PLEKHN1 NOC2L RNF223 LOC100288175 PERM1 LOC100130417 AGRN C1orf159 HES4 ISG15 SAMD11
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion KLHL17 LOC284600 PERM1 LOC107985728 PLEKHN1 LOC100130417 NOC2L SAMD11
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain LOC284600 RNF223 PERM1 LOC100130417 C1orf159 TNFRSF4 ISG15 SAMD11 KLHL17 MIR429 TTLL10 LOC105378948 MIR200A TTLL10-AS1 LOC107985728 TNFRSF18 PLEKHN1 NOC2L LOC100288175 FAM41C MIR200B LINC01342 SDF4 AGRN HES4
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain LOC284600 LINC00115 RNF223 PERM1 LOC100130417 LOC107984841 C1orf159 ISG15 SAMD11 LOC101928626 KLHL17 LINC01128 MIR6723 LOC105378948 LOC107985728 PLEKHN1 MTND2P28 FAM87B LOC100287934 NOC2L OR4F16 LOC100288175 FAM41C LOC100133331 AGRN LOC105378947 LOC100288069 HES4 MTND1P23
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SLC35E2 LOC284600 MIR6726 RNF223 UBE2J2 CPSF3L FNDC10 FAM132A SSU72 C1orf159 ISG15 SAMD11 LOC102724312 B3GALT6 KLHL17 ATAD3C LINC01128 MIR6808 TTLL10 LOC105378948 TTLL10-AS1 LOC107985728 TNFRSF18 PLEKHN1 MIR6727 NOC2L CDK11A ATAD3B MMP23B TAS1R3 TMEM88B CCNL2 DVL1 SLC35E2B LOC100288069 NADK MMP23A LOC148413 LINC00115 CPTP MRPL20 ATAD3A CDK11B PUSL1 PERM1 ACAP3 LOC100130417 SCNN1D TNFRSF4 ANKRD65 MIR429 MIR200A FAM87B VWA1 LOC100287934 MIB2 TMEM240 LOC100288175 MXRA8 FAM41C MIR200B LINC01342 SDF4 AGRN HES4 AURKAIP1 LOC107985729
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC284600 LINC00115 RNF223 UBE2J2 PERM1 LOC100130417 FAM132A C1orf159 TNFRSF4 ISG15 SAMD11 B3GALT6 KLHL17 MIR429 LINC01128 TTLL10 LOC105378948 MIR200A TTLL10-AS1 LOC107985728 TNFRSF18 PLEKHN1 FAM87B NOC2L LOC100288175 FAM41C MIR200B LINC01342 SDF4 AGRN HES4
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain KLHL17 LOC105378948 PLEKHN1 NOC2L RNF223 LOC100288175 PERM1 LINC01342 AGRN C1orf159 HES4 ISG15 SAMD11
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC148413 LOC284600 CPTP MRPL20 MIR6726 RNF223 UBE2J2 CPSF3L PUSL1 PERM1 ACAP3 LOC100130417 SCNN1D FAM132A C1orf159 TNFRSF4 ISG15 ANKRD65 SAMD11 B3GALT6 KLHL17 MIR429 MIR6808 TTLL10 LOC105378948 MIR200A TTLL10-AS1 LOC107985728 TNFRSF18 PLEKHN1 MIR6727 NOC2L LOC100288175 MXRA8 TAS1R3 TMEM88B CCNL2 MIR200B LINC01342 DVL1 SDF4 AGRN HES4 AURKAIP1
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss KLHL17 LOC284600 PERM1 LOC107985728 PLEKHN1 LOC100130417 AGRN NOC2L HES4 ISG15 SAMD11
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion KLHL17 MIR429 TTLL10 LOC105378948 MIR200A TTLL10-AS1 TNFRSF18 PLEKHN1 NOC2L RNF223 LOC100288175 PERM1 MIR200B LINC01342 SDF4 AGRN C1orf159 HES4 TNFRSF4 ISG15 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain FAM41C KLHL17 LINC01128 LOC284600 PERM1 LOC107985728 PLEKHN1 LOC100130417 NOC2L HES4 SAMD11

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More Information


Additional Information:

For this assay, SNP(s) [rs74045018,rs76456117] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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