Hs03368950_cn

• Gene Symbol: SLC35E2B
• Assay Reference Genome Location: Chr.1:1671394 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 728661
• Gene Name: solute carrier family 35 member E2B
• Gene Aliases: SLC35E2
• Location: Chr.1:1661478-1692804 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC35E2B	NM_001110781.2			NP_001104251.1
	NM_001290264.1			NP_001277193.1
	XM_011542072.1			XP_011540374.1
	AB007916.3
	AK125619.1
	AK307886.1
	BC110653.1			AAI10654.1
	CR936618.1			CAI56761.1
	DA794179.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n54	Chr.1:1663759 - 1696548 on Build GRCh38	Loss	SLC35E2B
dgv5n111	Chr.1:1575421 - 1823403 on Build GRCh38	Deletion	GNB1 CDK11B CDK11A SLC35E2 MMP23A NADK FNDC10 MIB2 SLC35E2B MMP23B
dgv8n100	Chr.1:1569349 - 1741152 on Build GRCh38	Loss	SSU72 CDK11B CDK11A SLC35E2 MMP23A FNDC10 MIB2 SLC35E2B MMP23B
esv3575582	Chr.1:1624086 - 1721336 on Build GRCh38	Gain	CDK11B CDK11A MMP23A MIB2 SLC35E2B MMP23B
esv3585010	Chr.1:1670280 - 1751138 on Build GRCh38	Loss	CDK11A SLC35E2 MMP23A SLC35E2B
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	TNFRSF18 LOC105378949 LINC01128 LOC100132287 LINC00115 FNDC10 LOC100288175 CPSF3L GNB1 LOC284600 MMP23A ACAP3 MIR6726 FAAP20 ATAD3B OR4F16 PLEKHN1 FAM41C PERM1 LOC102725121 CALML6 WASH7P TNFRSF4 LOC100506504 OR4F29 MTND1P23 AGRN MIR6727 MIR6723 NADK LOC105378591 LOC100134822 C1orf159 MMP23B LOC105378948 VWA1 MIR429 LOC100129534 LOC100133331 MORN1 SCNN1D LOC105378592 PRKCZ SSU72 MIR6859-2 MIR200A NOC2L KLHL17 TAS1R3 SAMD11 MIB2 LINC01342 LOC148413 FAM132A ISG15 MIR6859-1 LOC101928626 ANKRD65 SKI LOC100288069 HES4 UBE2J2 LOC100287934 MIR1302-2 FAM87B MRPL20 B3GALT6 RNF223 CCNL2 LOC729737 MIR6808 LOC102724312 LOC107984841 CDK11A LOC105378947 ATAD3A MIR200B TMEM88B CPTP LOC107985729 DDX11L1 LOC107985728 AURKAIP1 SDF4 FAM138A SLC35E2B TMEM52 ATAD3C DVL1 SLC35E2 TTLL10 TTLL10-AS1 OR4F5 LOC105378589 MTND2P28 GABRD TMEM240 CFAP74 LOC100130417 CDK11B PUSL1 MXRA8
nsv1160797	Chr.1:1566216 - 1805918 on Build GRCh38	Duplication	SSU72 GNB1 CDK11B CDK11A SLC35E2 MMP23A NADK FNDC10 MIB2 SLC35E2B MMP23B
dgv2e199	Chr.1:1653096 - 1721890 on Build GRCh38	Deletion	CDK11B CDK11A MMP23A SLC35E2B
esv2760410	Chr.1:1565561 - 1756248 on Build GRCh38	Gain+Loss	SSU72 CDK11B CDK11A SLC35E2 MMP23A NADK FNDC10 MIB2 SLC35E2B MMP23B
esv3585008	Chr.1:1663929 - 1681002 on Build GRCh38	Loss	SLC35E2B
esv3585007	Chr.1:1647187 - 1714507 on Build GRCh38	Loss	CDK11B CDK11A MMP23A SLC35E2B
nsv950516	Chr.1:1663141 - 1715961 on Build GRCh38	Deletion	CDK11A MMP23A SLC35E2B
esv27786	Chr.1:1632502 - 1752267 on Build GRCh38	Gain	CDK11B CDK11A SLC35E2 MMP23A NADK SLC35E2B MMP23B
nsv545022	Chr.1:1665581 - 1683909 on Build GRCh38	Loss	SLC35E2B
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	TNFRSF18 LOC148413 FAM132A LINC01128 LINC00115 FNDC10 LOC100288175 ISG15 CPSF3L ANKRD65 LOC284600 MMP23A ACAP3 LOC100288069 MIR6726 HES4 UBE2J2 LOC100287934 ATAD3B PLEKHN1 FAM41C FAM87B MRPL20 PERM1 B3GALT6 RNF223 CCNL2 TNFRSF4 MIR6808 LOC102724312 AGRN MIR6727 CDK11A ATAD3A MIR200B NADK C1orf159 TMEM88B CPTP LOC107985729 MMP23B LOC105378948 VWA1 MIR429 LOC107985728 AURKAIP1 SDF4 SLC35E2B SCNN1D SSU72 ATAD3C DVL1 SLC35E2 TTLL10 MIR200A TTLL10-AS1 NOC2L KLHL17 TAS1R3 TMEM240 LOC100130417 CDK11B SAMD11 PUSL1 MIB2 MXRA8 LINC01342
nsv545026	Chr.1:1671348 - 1706566 on Build GRCh38	Loss	CDK11A MMP23A SLC35E2B
nsv545018	Chr.1:1638499 - 1688102 on Build GRCh38	Loss	CDK11B SLC35E2B
dgv3n67	Chr.1:1653920 - 1735718 on Build GRCh38	Gain	CDK11B CDK11A SLC35E2 MMP23A SLC35E2B
esv2758913	Chr.1:1389149 - 2092899 on Build GRCh38	Gain+Loss	LOC148413 LOC105378949 CDK11A ATAD3A NADK FNDC10 LOC105378591 TMEM88B LOC107985729 MMP23B ANKRD65 VWA1 GNB1 MMP23A SLC35E2B PRKCZ SSU72 TMEM52 ATAD3C ATAD3B SLC35E2 LOC105378589 GABRD MRPL20 TMEM240 CFAP74 CDK11B CCNL2 CALML6 MIB2 LOC102724312

More Information

Additional Information:

For this assay, SNP(s) [rs79690428] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

secondary carrier transporter