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Gene Symbol
TNFRSF4
Assay Reference Genome
Location

Chr.1:1213157 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03375719_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 7293

Gene Name:

 TNF receptor superfamily member 4

Gene Aliases:

 ACT35, CD134, IMD16, OX40, TXGP1L

Location:

 Chr.1:1211326-1216812 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
TNFRSF4 NM_003327.3 NP_003318.1
XM_011542074.2 1 600 XP_011540376.1
XM_011542075.2 XP_011540377.1
XM_011542076.2 1 600 XP_011540378.1
XM_017002231.1 XP_016857720.1
XM_017002232.1 XP_016857721.1
BC105070.1 AAI05071.1
BC105072.1 AAI05073.1
S76792.1 AAB33944.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CCNL2 TNFRSF18 MORN1 MIR6726 ATAD3C TMEM88B MIR200B MIR6859-2 TAS1R3 ATAD3A LOC100506504 C1orf159 B3GALT6 LOC102724312 HES4 FAM87B LOC148413 CFAP74 PUSL1 LOC105378589 CDK11A PERM1 CDK11B SDF4 KLHL17 MXRA8 LOC105378948 OR4F29 TMEM240 MIB2 ACAP3 ANKRD65 LINC00115 FAM132A WASH7P LOC105378591 FAAP20 LOC100133331 GNB1 LOC107985728 SSU72 VWA1 LINC01342 OR4F16 DVL1 LOC107985729 TMEM52 MIR1302-2 FAM138A SLC35E2 LOC100288175 MMP23B LOC105378947 MTND1P23 LOC100130417 LOC101928626 TTLL10-AS1 LOC100288069 NOC2L PRKCZ MIR200A CALML6 LOC100129534 SLC35E2B FNDC10 MIR6723 MRPL20 TNFRSF4 AURKAIP1 RNF223 LOC729737 TTLL10 SKI LINC01128 MMP23A GABRD SAMD11 FAM41C LOC100287934 LOC100134822 DDX11L1 MTND2P28 LOC100132287 LOC107984841 CPSF3L NADK ATAD3B MIR429 SCNN1D MIR6859-1 PLEKHN1 AGRN LOC102725121 ISG15 MIR6727 LOC105378592 CPTP UBE2J2 MIR6808 LOC284600 LOC105378949 OR4F5
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain MIR200B TNFRSF18 FAM132A TNFRSF4 RNF223 C1orf159 SDF4 B3GALT6 TTLL10 LOC105378948 TTLL10-AS1 UBE2J2 LINC01342 MIR200A MIR429 SCNN1D
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TNFRSF18 SDF4 MXRA8 MIR6726 TTLL10-AS1 CPSF3L MIR200A MIR429 SCNN1D MIR200B ACAP3 TAS1R3 FAM132A TNFRSF4 AURKAIP1 RNF223 C1orf159 MIR6727 B3GALT6 TTLL10 CPTP UBE2J2 LINC01342 MIR6808 DVL1 PUSL1
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10-AS1 TNFRSF18 TNFRSF4 SDF4 B3GALT6 TTLL10
nsv544963 Chr.1:1206945 - 1214281 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication TNFRSF18 LOC100288175 SDF4 LOC105378948 MIR6726 TTLL10-AS1 CPSF3L MIR200A MIR429 SCNN1D MIR200B AGRN ACAP3 TAS1R3 FAM132A TNFRSF4 RNF223 C1orf159 MIR6727 B3GALT6 TTLL10 CPTP UBE2J2 LINC01342 PUSL1
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF18 PERM1 LOC100288175 SAMD11 FAM41C SDF4 LOC100130417 KLHL17 LOC105378948 TTLL10-AS1 NOC2L MIR200A MIR429 PLEKHN1 MIR200B AGRN TNFRSF4 ISG15 RNF223 C1orf159 TTLL10 LOC107985728 HES4 LINC01342 LOC284600
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CCNL2 TNFRSF18 LOC100288175 MMP23B LOC100130417 MIR6726 TTLL10-AS1 ATAD3C LOC100288069 NOC2L MIR200A TMEM88B MIR200B SLC35E2B FNDC10 TAS1R3 MRPL20 TNFRSF4 ATAD3A AURKAIP1 RNF223 C1orf159 B3GALT6 TTLL10 LOC102724312 LINC01128 HES4 FAM87B MMP23A LOC148413 PUSL1 CDK11A PERM1 CDK11B SAMD11 FAM41C LOC100287934 SDF4 KLHL17 MXRA8 LOC105378948 CPSF3L NADK ATAD3B TMEM240 MIR429 SCNN1D MIB2 PLEKHN1 AGRN ACAP3 ANKRD65 LINC00115 FAM132A ISG15 MIR6727 LOC107985728 CPTP SSU72 UBE2J2 VWA1 LINC01342 MIR6808 LOC284600 DVL1 LOC107985729 SLC35E2
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CCNL2 TNFRSF18 MMP23B CDK11B SDF4 MXRA8 MIR6726 TTLL10-AS1 ATAD3C CPSF3L ATAD3B MIR200A TMEM240 TMEM88B MIR429 SCNN1D MIB2 MIR200B ACAP3 FNDC10 ANKRD65 TAS1R3 MRPL20 FAM132A TNFRSF4 ATAD3A AURKAIP1 C1orf159 MIR6727 B3GALT6 TTLL10 LOC102724312 CPTP SSU72 UBE2J2 VWA1 LINC01342 MIR6808 DVL1 LOC107985729 LOC148413 PUSL1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF18 PERM1 LOC100288175 SAMD11 FAM41C SDF4 LOC100130417 KLHL17 LOC105378948 TTLL10-AS1 NOC2L MIR200A MIR429 PLEKHN1 MIR200B AGRN LINC00115 FAM132A TNFRSF4 ISG15 RNF223 C1orf159 B3GALT6 TTLL10 LOC107985728 UBE2J2 LINC01128 HES4 LINC01342 LOC284600 FAM87B
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 MIR200B AGRN TNFRSF18 PERM1 LOC100288175 TNFRSF4 ISG15 SAMD11 RNF223 C1orf159 SDF4 KLHL17 TTLL10 LOC105378948 TTLL10-AS1 HES4 LINC01342 NOC2L MIR200A MIR429
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain CCNL2 TNFRSF18 PERM1 LOC100288175 SAMD11 SDF4 LOC100130417 KLHL17 MXRA8 LOC105378948 MIR6726 TTLL10-AS1 CPSF3L NOC2L MIR200A TMEM88B MIR429 SCNN1D PLEKHN1 MIR200B AGRN ACAP3 ANKRD65 TAS1R3 MRPL20 FAM132A TNFRSF4 AURKAIP1 ISG15 RNF223 C1orf159 MIR6727 B3GALT6 TTLL10 LOC107985728 CPTP UBE2J2 HES4 LINC01342 MIR6808 LOC284600 DVL1 LOC148413 PUSL1
dgv24n54 Chr.1:1205055 - 1213515 on Build GRCh38 Loss TNFRSF18 TNFRSF4
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain MIR200B ACAP3 TNFRSF18 FAM132A TNFRSF4 MIR6727 SDF4 B3GALT6 TTLL10 MIR6726 TTLL10-AS1 UBE2J2 CPSF3L MIR200A MIR429 PUSL1 SCNN1D

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