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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1225106 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03378628_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication ACAP3 MIR200B TNFRSF4 MIR6726 AGRN B3GALT6 TTLL10 LINC01342 CPSF3L LOC100288175 PUSL1 MIR200A SDF4 SCNN1D TNFRSF18 LOC105378948 MIR6727 MIR429 FAM132A C1orf159 TTLL10-AS1 CPTP TAS1R3 RNF223 UBE2J2
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss SAMD11 MIR6808 MIR200B LOC148413 TNFRSF4 MIR6726 FNDC10 AGRN NADK HES4 TTLL10 LOC100288069 PERM1 LOC102724312 ATAD3C LINC01342 ATAD3A TMEM88B LOC100287934 LOC107985728 SSU72 MIR6727 MIR429 LOC107985729 LOC100130417 FAM132A ANKRD65 LOC284600 SLC35E2B TMEM240 PLEKHN1 TAS1R3 CDK11A UBE2J2 VWA1 ACAP3 MMP23A B3GALT6 NOC2L ISG15 LINC00115 CCNL2 MXRA8 MIB2 MRPL20 ATAD3B CPSF3L LOC100288175 PUSL1 MIR200A FAM87B SDF4 CDK11B SCNN1D TNFRSF18 FAM41C LOC105378948 AURKAIP1 SLC35E2 C1orf159 DVL1 TTLL10-AS1 MMP23B CPTP KLHL17 RNF223 LINC01128
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss SDF4 B3GALT6 UBE2J2 FAM132A
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss SAMD11 CALML6 MIR200B LOC148413 TNFRSF4 FNDC10 AGRN HES4 LOC100288069 WASH7P ATAD3C LINC01342 ATAD3A LOC100287934 GNB1 OR4F5 LOC105378589 LOC100132287 LOC102725121 MIR6723 ANKRD65 LOC284600 SLC35E2B LOC105378947 LOC100133331 GABRD TAS1R3 LOC729737 CDK11A UBE2J2 VWA1 MMP23A B3GALT6 NOC2L FAM138A LOC100134822 FAAP20 ISG15 LINC00115 MXRA8 MIB2 MRPL20 LOC107984841 CFAP74 CPSF3L PUSL1 MIR200A SDF4 SCNN1D MTND2P28 AURKAIP1 C1orf159 MIR6808 MIR1302-2 MIR6726 DDX11L1 NADK OR4F29 PRKCZ LOC101928626 TTLL10 PERM1 OR4F16 LOC102724312 TMEM52 LOC105378591 TMEM88B LOC105378592 LOC107985728 SSU72 MIR6727 MIR429 LOC107985729 LOC100130417 FAM132A LOC100506504 TMEM240 PLEKHN1 ACAP3 MORN1 MIR6859-1 MIR6859-2 CCNL2 ATAD3B LOC100288175 FAM87B CDK11B LOC105378949 MTND1P23 TNFRSF18 FAM41C LOC105378948 LOC100129534 SKI SLC35E2 DVL1 TTLL10-AS1 MMP23B CPTP KLHL17 RNF223 LINC01128
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion MIR6808 ACAP3 MIR200B LOC148413 TNFRSF4 MIR6726 FNDC10 B3GALT6 TTLL10 CCNL2 LOC102724312 ATAD3C LINC01342 MXRA8 MIB2 ATAD3A MRPL20 ATAD3B CPSF3L TMEM88B PUSL1 MIR200A SDF4 CDK11B SSU72 SCNN1D TNFRSF18 MIR6727 MIR429 LOC107985729 AURKAIP1 FAM132A C1orf159 DVL1 ANKRD65 TTLL10-AS1 MMP23B CPTP TMEM240 TAS1R3 UBE2J2 VWA1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss SAMD11 MIR200B TNFRSF4 AGRN B3GALT6 HES4 NOC2L TTLL10 PERM1 ISG15 LINC00115 LINC01342 LOC100288175 MIR200A FAM87B LOC107985728 SDF4 TNFRSF18 FAM41C LOC105378948 MIR429 LOC100130417 FAM132A C1orf159 LOC284600 TTLL10-AS1 KLHL17 PLEKHN1 RNF223 LINC01128 UBE2J2
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SAMD11 MIR6808 ACAP3 MIR200B LOC148413 TNFRSF4 MIR6726 AGRN B3GALT6 HES4 NOC2L TTLL10 PERM1 ISG15 CCNL2 LINC01342 MXRA8 MRPL20 CPSF3L LOC100288175 TMEM88B PUSL1 MIR200A LOC107985728 SDF4 SCNN1D TNFRSF18 LOC105378948 MIR6727 MIR429 LOC100130417 AURKAIP1 FAM132A C1orf159 DVL1 ANKRD65 LOC284600 TTLL10-AS1 CPTP KLHL17 PLEKHN1 TAS1R3 RNF223 UBE2J2
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain SDF4 MIR200B SCNN1D TNFRSF18 TNFRSF4 LOC105378948 B3GALT6 MIR429 TTLL10 FAM132A LINC01342 C1orf159 TTLL10-AS1 RNF223 UBE2J2 MIR200A
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss MIR6808 ACAP3 MIR200B TNFRSF4 MIR6726 B3GALT6 TTLL10 LINC01342 MXRA8 CPSF3L PUSL1 MIR200A SDF4 SCNN1D TNFRSF18 MIR6727 MIR429 AURKAIP1 FAM132A C1orf159 DVL1 TTLL10-AS1 CPTP TAS1R3 RNF223 UBE2J2
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss SDF4 TNFRSF18 TNFRSF4 TTLL10-AS1 B3GALT6 TTLL10
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SDF4 ACAP3 MIR200B SCNN1D TNFRSF18 TNFRSF4 MIR6726 B3GALT6 MIR6727 MIR429 TTLL10 FAM132A TTLL10-AS1 CPSF3L PUSL1 UBE2J2 MIR200A

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