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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1227187 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03381581_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication FAM132A TAS1R3 TNFRSF4 TNFRSF18 SCNN1D C1orf159 B3GALT6 PUSL1 CPSF3L ACAP3 MIR200B UBE2J2 MIR6726 RNF223 AGRN MIR200A LINC01342 TTLL10 LOC105378948 MIR6727 LOC100288175 MIR429 SDF4 TTLL10-AS1 CPTP
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CDK11A CDK11B LOC100288069 FAM132A SCNN1D SLC35E2 PUSL1 NOC2L ACAP3 MIR200B LOC284600 FNDC10 TMEM88B FAM87B SLC35E2B AGRN MIR200A LINC01342 TTLL10 LOC102724312 MMP23B LOC107985729 LOC105378948 LOC107985728 MIR6808 SDF4 CPTP AURKAIP1 SAMD11 TAS1R3 TNFRSF4 MIB2 LOC100130417 VWA1 TNFRSF18 PLEKHN1 C1orf159 NADK B3GALT6 ANKRD65 MRPL20 CPSF3L UBE2J2 MIR6726 ATAD3C SSU72 ATAD3B RNF223 CCNL2 LINC01128 ISG15 TMEM240 MXRA8 PERM1 HES4 LINC00115 DVL1 ATAD3A MMP23A LOC148413 MIR6727 KLHL17 LOC100288175 MIR429 FAM41C TTLL10-AS1 LOC100287934
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss B3GALT6 FAM132A UBE2J2 SDF4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss CDK11A CDK11B LOC729737 LOC107984841 GNB1 PUSL1 FNDC10 DDX11L1 LOC100129534 SLC35E2B MIR6859-1 FAM138A LOC105378947 LOC102724312 CFAP74 LOC105378948 LOC105378591 CALML6 OR4F29 GABRD MIR6859-2 LOC107985728 WASH7P MIR6808 SDF4 TNFRSF4 MIB2 VWA1 TNFRSF18 PLEKHN1 C1orf159 NADK B3GALT6 ANKRD65 MRPL20 CPSF3L UBE2J2 MIR6726 ATAD3B LOC100133331 CCNL2 ISG15 TMEM240 MXRA8 OR4F16 PERM1 KLHL17 LOC101928626 MIR429 FAM41C LOC100287934 TMEM52 MORN1 LOC100288069 FAM132A MTND2P28 SCNN1D SLC35E2 NOC2L ACAP3 MIR200B LOC284600 TMEM88B FAM87B LOC105378949 AGRN MIR200A LINC01342 TTLL10 MMP23B LOC107985729 LOC105378589 CPTP AURKAIP1 SAMD11 TAS1R3 LOC100130417 MIR1302-2 MIR6723 LOC105378592 ATAD3C SKI LOC102725121 SSU72 RNF223 LINC01128 LOC100132287 LOC100506504 FAAP20 HES4 LINC00115 DVL1 OR4F5 PRKCZ ATAD3A MMP23A LOC148413 MIR6727 MTND1P23 LOC100288175 TTLL10-AS1 LOC100134822
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion CDK11B FAM132A TAS1R3 TNFRSF4 MIB2 VWA1 TNFRSF18 SCNN1D C1orf159 B3GALT6 ANKRD65 MRPL20 PUSL1 CPSF3L ACAP3 MIR200B FNDC10 UBE2J2 MIR6726 TMEM88B ATAD3C SSU72 ATAD3B CCNL2 TMEM240 MXRA8 MIR200A LINC01342 TTLL10 LOC102724312 MMP23B LOC107985729 DVL1 ATAD3A LOC148413 MIR6727 MIR429 MIR6808 SDF4 TTLL10-AS1 CPTP AURKAIP1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss SAMD11 FAM132A TNFRSF4 LOC100130417 TNFRSF18 PLEKHN1 C1orf159 B3GALT6 NOC2L MIR200B LOC284600 UBE2J2 FAM87B RNF223 LINC01128 ISG15 AGRN MIR200A LINC01342 PERM1 TTLL10 HES4 LINC00115 LOC105378948 KLHL17 LOC107985728 LOC100288175 MIR429 FAM41C SDF4 TTLL10-AS1
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain SAMD11 FAM132A TAS1R3 TNFRSF4 LOC100130417 TNFRSF18 PLEKHN1 SCNN1D C1orf159 B3GALT6 ANKRD65 MRPL20 PUSL1 NOC2L CPSF3L ACAP3 MIR200B LOC284600 UBE2J2 MIR6726 TMEM88B RNF223 CCNL2 ISG15 AGRN MXRA8 MIR200A LINC01342 PERM1 TTLL10 HES4 DVL1 LOC105378948 LOC148413 MIR6727 KLHL17 LOC107985728 LOC100288175 MIR429 MIR6808 SDF4 TTLL10-AS1 CPTP AURKAIP1
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain FAM132A TNFRSF4 MIR200A LINC01342 TNFRSF18 TTLL10 SCNN1D C1orf159 LOC105378948 B3GALT6 MIR200B UBE2J2 MIR429 SDF4 TTLL10-AS1 RNF223
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss FAM132A TAS1R3 TNFRSF4 TNFRSF18 SCNN1D C1orf159 B3GALT6 PUSL1 CPSF3L ACAP3 MIR200B UBE2J2 MIR6726 RNF223 MXRA8 MIR200A LINC01342 TTLL10 DVL1 MIR6727 MIR429 MIR6808 SDF4 TTLL10-AS1 CPTP AURKAIP1
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TNFRSF4 TNFRSF18 TTLL10 SDF4 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain FAM132A TNFRSF4 MIR200A TNFRSF18 TTLL10 SCNN1D B3GALT6 PUSL1 CPSF3L MIR6727 ACAP3 MIR200B UBE2J2 MIR6726 MIR429 SDF4 TTLL10-AS1

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