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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:940154 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03383649_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
CN293867.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain PLEKHN1 LOC107985728 RNF223 C1orf159 SAMD11 AGRN LOC100130417 NOC2L LOC100288175 LOC284600 KLHL17 LOC105378948 ISG15 HES4 PERM1
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss MRPL20 LOC107985728 RNF223 LOC100287934 UBE2J2 MIR200A TTLL10-AS1 LOC102725121 CPTP LINC00115 VWA1 LOC105378592 NADK SLC35E2B LOC100288175 ISG15 LOC100132287 LOC100133331 ANKRD65 MMP23A LOC100129534 CALML6 AURKAIP1 LOC100288069 C1orf159 SAMD11 LOC100506504 AGRN SCNN1D TTLL10 ACAP3 LOC105378589 SDF4 TAS1R3 FAM41C FAM132A MIR6726 LOC105378591 FAAP20 MIR6723 LOC729737 MIR6808 LOC107985729 PERM1 OR4F16 PLEKHN1 MTND1P23 MXRA8 TNFRSF18 GABRD NOC2L LOC100134822 CCNL2 SKI PRKCZ GNB1 CDK11A MORN1 TMEM88B TMEM240 LOC105378949 LOC102724312 MIR6859-1 SSU72 CFAP74 OR4F5 LOC105378947 LOC100130417 FAM138A TMEM52 TNFRSF4 LOC101928626 FNDC10 LOC105378948 ATAD3C MMP23B MIB2 MIR6727 PUSL1 MIR429 CDK11B LOC148413 WASH7P OR4F29 FAM87B SLC35E2 DVL1 ATAD3B LINC01128 DDX11L1 CPSF3L MIR200B MIR1302-2 MIR6859-2 LOC284600 ATAD3A LOC107984841 KLHL17 MTND2P28 HES4 LINC01342 B3GALT6
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion PLEKHN1 LOC107985728 RNF223 C1orf159 SAMD11 AGRN LOC100130417 NOC2L LOC100288175 LOC284600 KLHL17 LOC105378948 ISG15 HES4 PERM1
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC100130417 PLEKHN1 NOC2L LOC284600 LOC107985728 SAMD11 KLHL17 PERM1
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss NOC2L SAMD11
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain PLEKHN1 MIR429 LOC107985728 RNF223 C1orf159 SAMD11 MIR200A AGRN TNFRSF18 NOC2L TTLL10 TTLL10-AS1 SDF4 FAM41C MIR200B LOC100130417 TNFRSF4 LOC100288175 LOC284600 KLHL17 LOC105378948 ISG15 HES4 LINC01342 PERM1
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss PLEKHN1 MRPL20 LOC107985728 RNF223 LOC100287934 UBE2J2 MIR200A MXRA8 TNFRSF18 NOC2L CCNL2 TTLL10-AS1 CPTP CDK11A LINC00115 VWA1 TMEM88B TMEM240 LOC102724312 SSU72 NADK LOC100130417 SLC35E2B TNFRSF4 LOC100288175 FNDC10 LOC105378948 ATAD3C ISG15 MMP23B MIB2 ANKRD65 MMP23A MIR6727 PUSL1 AURKAIP1 LOC100288069 MIR429 C1orf159 CDK11B SAMD11 LOC148413 AGRN SCNN1D TTLL10 FAM87B SLC35E2 ACAP3 DVL1 ATAD3B LINC01128 SDF4 TAS1R3 CPSF3L FAM41C FAM132A MIR200B MIR6726 MIR6808 LOC284600 ATAD3A LOC107985729 KLHL17 HES4 LINC01342 B3GALT6 PERM1
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain OR4F16 LOC100133331 PLEKHN1 LOC100288069 LOC107985728 MTND1P23 RNF223 C1orf159 LOC100287934 SAMD11 AGRN NOC2L FAM87B LINC01128 LINC00115 FAM41C LOC105378947 LOC100130417 MIR6723 LOC100288175 LOC284600 LOC101928626 LOC107984841 KLHL17 LOC105378948 MTND2P28 ISG15 HES4 PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss PLEKHN1 MIR429 LOC107985728 RNF223 C1orf159 SAMD11 UBE2J2 MIR200A AGRN TNFRSF18 NOC2L TTLL10 FAM87B TTLL10-AS1 LINC01128 SDF4 LINC00115 FAM41C FAM132A MIR200B LOC100130417 TNFRSF4 LOC100288175 LOC284600 KLHL17 LOC105378948 ISG15 HES4 LINC01342 B3GALT6 PERM1
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain PLEKHN1 RNF223 C1orf159 SAMD11 AGRN NOC2L LOC100288175 KLHL17 LOC105378948 ISG15 HES4 LINC01342 PERM1
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion PLEKHN1 MIR429 RNF223 C1orf159 SAMD11 MIR200B MIR200A AGRN TNFRSF18 NOC2L TNFRSF4 TTLL10 LOC100288175 TTLL10-AS1 KLHL17 LOC105378948 ISG15 HES4 LINC01342 PERM1 SDF4
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC100130417 PLEKHN1 NOC2L LOC284600 LOC107985728 SAMD11 KLHL17 ISG15 HES4 PERM1 AGRN
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain ANKRD65 MIR6727 PLEKHN1 PUSL1 MRPL20 AURKAIP1 MIR429 LOC107985728 RNF223 C1orf159 SAMD11 UBE2J2 MIR200A MXRA8 LOC148413 AGRN TNFRSF18 SCNN1D NOC2L TTLL10 CCNL2 TTLL10-AS1 ACAP3 DVL1 CPTP SDF4 TAS1R3 CPSF3L TMEM88B FAM132A MIR200B MIR6726 LOC100130417 TNFRSF4 MIR6808 LOC100288175 LOC284600 KLHL17 LOC105378948 ISG15 HES4 LINC01342 B3GALT6 PERM1
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC100130417 PLEKHN1 NOC2L FAM41C LOC284600 LOC107985728 SAMD11 KLHL17 HES4 LINC01128 PERM1

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More Information


Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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