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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:943194 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03384237_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 11 - Exon 12
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
AK054643.1 BAB70781.1
BC024295.2 AAH24295.1
BC033213.1 AAH33213.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1 10 1700
JX093079.1
JX093080.1 10 1655
JX093081.1
JX093082.1 10 1652
JX093083.1 10 1652
JX093084.1 8 1376
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1 5 1020
JX093099.1 11 1788
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1 8 1597
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv15n54 Chr.1:934063 - 943937 on Build GRCh38 Loss SAMD11
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC107985728 LOC105378948 SAMD11 LOC284600 AGRN C1orf159 LOC100130417 KLHL17 NOC2L PLEKHN1 RNF223 ISG15 LOC100288175 PERM1 HES4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100287934 TNFRSF18 MIR6727 NADK MORN1 FAM138A OR4F5 UBE2J2 MMP23A MIR200B CPTP MIR6723 SAMD11 LOC101928626 MTND1P23 LOC105378949 PLEKHN1 PRKCZ LINC01342 ATAD3B OR4F29 LOC100288175 LOC107985729 MRPL20 ATAD3A LOC105378591 OR4F16 LOC148413 CDK11B LOC100134822 LOC284600 CCNL2 FAM87B MXRA8 TAS1R3 LOC102724312 MIR6859-1 VWA1 HES4 MIR6726 DDX11L1 CPSF3L MIR200A TMEM240 AURKAIP1 CDK11A SKI MMP23B LOC105378589 PERM1 CFAP74 LOC105378948 PUSL1 TTLL10-AS1 DVL1 NOC2L RNF223 SCNN1D FAAP20 GNB1 LINC00115 FAM41C LOC100132287 TMEM52 MTND2P28 LINC01128 SSU72 SLC35E2 SDF4 C1orf159 FNDC10 LOC102725121 LOC729737 LOC100288069 LOC100129534 SLC35E2B TMEM88B LOC107985728 TNFRSF4 MIB2 LOC105378947 LOC100506504 ATAD3C GABRD MIR6859-2 B3GALT6 FAM132A LOC105378592 MIR1302-2 ACAP3 LOC107984841 AGRN LOC100133331 CALML6 LOC100130417 ANKRD65 KLHL17 TTLL10 ISG15 MIR6808 WASH7P MIR429
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC107985728 LOC105378948 SAMD11 LOC284600 AGRN C1orf159 LOC100130417 KLHL17 NOC2L PLEKHN1 RNF223 ISG15 LOC100288175 PERM1 HES4
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion LOC107985728 SAMD11 LOC284600 PERM1 LOC100130417 KLHL17 NOC2L PLEKHN1
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss SAMD11 NOC2L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain TNFRSF18 LOC107985728 LOC105378948 TTLL10-AS1 LOC284600 TNFRSF4 NOC2L RNF223 MIR200B HES4 FAM41C MIR200A SAMD11 AGRN SDF4 C1orf159 LOC100130417 KLHL17 TTLL10 PLEKHN1 LINC01342 ISG15 LOC100288175 PERM1 MIR429
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC100287934 TNFRSF18 MIR6727 NADK LOC105378948 PUSL1 TTLL10-AS1 DVL1 NOC2L RNF223 SCNN1D UBE2J2 MMP23A MIR200B CPTP LINC00115 FAM41C LINC01128 SAMD11 SSU72 SLC35E2 SDF4 C1orf159 FNDC10 PLEKHN1 LINC01342 ATAD3B LOC100288069 LOC100288175 LOC107985729 MRPL20 ATAD3A SLC35E2B TMEM88B LOC148413 LOC107985728 CDK11B LOC284600 TNFRSF4 MIB2 CCNL2 FAM87B ATAD3C MXRA8 TAS1R3 LOC102724312 B3GALT6 FAM132A ACAP3 VWA1 HES4 MIR6726 CPSF3L MIR200A AGRN TMEM240 AURKAIP1 CDK11A LOC100130417 ANKRD65 KLHL17 TTLL10 MMP23B ISG15 MIR6808 PERM1 MIR429
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain OR4F16 LOC100287934 LOC107985728 LOC105378948 LOC284600 LOC105378947 FAM87B NOC2L RNF223 LOC107984841 LINC00115 HES4 FAM41C MIR6723 MTND2P28 LINC01128 SAMD11 AGRN LOC101928626 LOC100133331 C1orf159 LOC100130417 KLHL17 MTND1P23 PLEKHN1 LOC100288069 ISG15 LOC100288175 PERM1
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss TNFRSF18 LOC107985728 LOC105378948 TTLL10-AS1 LOC284600 TNFRSF4 FAM87B NOC2L RNF223 B3GALT6 FAM132A UBE2J2 MIR200B LINC00115 HES4 FAM41C MIR200A LINC01128 SAMD11 AGRN SDF4 C1orf159 LOC100130417 KLHL17 TTLL10 PLEKHN1 LINC01342 ISG15 LOC100288175 PERM1 MIR429
nsv1013524 Chr.1:939510 - 1161955 on Build GRCh38 Gain LOC105378948 SAMD11 AGRN C1orf159 KLHL17 NOC2L PLEKHN1 RNF223 LINC01342 ISG15 LOC100288175 PERM1 HES4
nsv1160644 Chr.1:939652 - 1220663 on Build GRCh38 Deletion TNFRSF18 MIR200A LOC105378948 SAMD11 TTLL10-AS1 TNFRSF4 AGRN SDF4 C1orf159 KLHL17 TTLL10 NOC2L PLEKHN1 RNF223 LINC01342 ISG15 LOC100288175 PERM1 MIR200B HES4 MIR429
nsv544895 Chr.1:917392 - 1054900 on Build GRCh38 Loss LOC107985728 SAMD11 ISG15 LOC284600 AGRN PERM1 LOC100130417 KLHL17 NOC2L PLEKHN1 HES4
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain TMEM88B TNFRSF18 MIR6727 LOC148413 LOC107985728 LOC105378948 PUSL1 TTLL10-AS1 LOC284600 TNFRSF4 DVL1 CCNL2 MXRA8 NOC2L RNF223 SCNN1D TAS1R3 B3GALT6 FAM132A UBE2J2 MIR200B ACAP3 CPTP HES4 MIR6726 CPSF3L MIR200A SAMD11 AGRN SDF4 C1orf159 AURKAIP1 LOC100130417 ANKRD65 KLHL17 TTLL10 PLEKHN1 LINC01342 ISG15 MIR6808 LOC100288175 PERM1 MRPL20 MIR429
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain LOC107985728 SAMD11
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain LOC107985728 LINC01128 SAMD11 LOC284600 PERM1 LOC100130417 KLHL17 NOC2L PLEKHN1 HES4 FAM41C

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More Information


Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:


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