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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1231194 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03384685_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication LOC100288175 TTLL10 TNFRSF18 MIR6726 MIR200B PUSL1 MIR429 LINC01342 CPSF3L AGRN UBE2J2 FAM132A B3GALT6 TTLL10-AS1 RNF223 SCNN1D MIR6727 MIR200A CPTP SDF4 TNFRSF4 ACAP3 C1orf159 LOC105378948 TAS1R3
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss TTLL10 HES4 TNFRSF18 SSU72 MXRA8 PUSL1 SLC35E2 LOC102724312 MIR6808 LOC100287934 LINC01342 SLC35E2B CPSF3L FAM87B SAMD11 MMP23A ATAD3A TTLL10-AS1 PERM1 LINC00115 LOC100288069 RNF223 SCNN1D LOC284600 MIR6727 ATAD3B CDK11B MIR200A CPTP SDF4 ANKRD65 DVL1 CCNL2 KLHL17 LINC01128 ATAD3C TAS1R3 FNDC10 LOC100288175 LOC148413 MIR6726 TMEM88B MIR200B LOC100130417 LOC107985728 MIR429 CDK11A AGRN UBE2J2 FAM132A NADK FAM41C B3GALT6 TMEM240 AURKAIP1 PLEKHN1 MIB2 VWA1 NOC2L ISG15 TNFRSF4 ACAP3 C1orf159 LOC105378948 MMP23B LOC107985729 MRPL20
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 FAM132A B3GALT6 SDF4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss FAM138A TTLL10 HES4 SSU72 OR4F29 LOC105378949 SLC35E2B CPSF3L MMP23A DDX11L1 OR4F5 ATAD3A TMEM52 TTLL10-AS1 LINC00115 MIR6723 LOC100288069 SCNN1D OR4F16 LOC284600 ATAD3B CDK11B MIR200A MIR6859-2 LOC105378592 CCNL2 KLHL17 PRKCZ FNDC10 LOC148413 MIR6726 TMEM88B MIR200B GABRD LOC100134822 MIR429 AGRN UBE2J2 MIR1302-2 NADK FAM41C AURKAIP1 PLEKHN1 MIB2 MTND1P23 CFAP74 ISG15 TNFRSF4 C1orf159 LOC105378948 MMP23B SKI MORN1 TNFRSF18 MXRA8 PUSL1 SLC35E2 LOC105378947 LOC102724312 MIR6808 LOC100287934 LINC01342 FAM87B SAMD11 LOC107984841 PERM1 RNF223 CALML6 MTND2P28 MIR6727 CPTP SDF4 ANKRD65 DVL1 LINC01128 ATAD3C LOC100506504 TAS1R3 LOC100288175 LOC100133331 LOC100130417 LOC107985728 FAAP20 LOC729737 CDK11A GNB1 FAM132A MIR6859-1 B3GALT6 TMEM240 LOC105378591 VWA1 NOC2L LOC100132287 WASH7P ACAP3 LOC101928626 LOC100129534 LOC107985729 LOC105378589 LOC102725121 MRPL20
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion FNDC10 LOC148413 TTLL10 TNFRSF18 SSU72 MIR6726 MXRA8 TMEM88B MIR200B PUSL1 LOC102724312 MIR429 MIR6808 LINC01342 CPSF3L UBE2J2 FAM132A B3GALT6 TMEM240 ATAD3A TTLL10-AS1 AURKAIP1 SCNN1D MIB2 VWA1 MIR6727 ATAD3B CDK11B MIR200A CPTP SDF4 TNFRSF4 ACAP3 C1orf159 MMP23B ANKRD65 DVL1 CCNL2 LOC107985729 ATAD3C MRPL20 TAS1R3
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC100288175 TTLL10 HES4 TNFRSF18 MIR200B LOC100130417 LOC107985728 MIR429 LINC01342 FAM87B AGRN SAMD11 UBE2J2 FAM132A FAM41C B3GALT6 TTLL10-AS1 PERM1 LINC00115 PLEKHN1 RNF223 LOC284600 NOC2L MIR200A SDF4 ISG15 TNFRSF4 C1orf159 LOC105378948 KLHL17 LINC01128
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC100288175 LOC148413 TTLL10 HES4 TNFRSF18 MIR6726 MXRA8 TMEM88B MIR200B PUSL1 LOC100130417 LOC107985728 MIR429 MIR6808 LINC01342 CPSF3L AGRN SAMD11 UBE2J2 FAM132A B3GALT6 TTLL10-AS1 PERM1 AURKAIP1 PLEKHN1 RNF223 SCNN1D LOC284600 MIR6727 NOC2L MIR200A CPTP SDF4 ISG15 TNFRSF4 ACAP3 C1orf159 LOC105378948 ANKRD65 DVL1 CCNL2 KLHL17 MRPL20 TAS1R3
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain RNF223 SCNN1D TTLL10 TNFRSF18 MIR200B MIR200A SDF4 TNFRSF4 MIR429 C1orf159 LOC105378948 LINC01342 UBE2J2 FAM132A B3GALT6 TTLL10-AS1
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss TTLL10 TNFRSF18 MIR6726 MXRA8 MIR200B PUSL1 MIR429 MIR6808 LINC01342 CPSF3L UBE2J2 FAM132A B3GALT6 TTLL10-AS1 AURKAIP1 RNF223 SCNN1D MIR6727 MIR200A CPTP SDF4 TNFRSF4 ACAP3 C1orf159 DVL1 TAS1R3
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF18 B3GALT6 SDF4 TNFRSF4 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain SCNN1D TTLL10 TNFRSF18 MIR6727 MIR6726 MIR200B PUSL1 MIR200A SDF4 TNFRSF4 ACAP3 MIR429 CPSF3L UBE2J2 FAM132A B3GALT6 TTLL10-AS1

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