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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1227843 on build GRCh38
Cytoband
1p36.33
Assay ID Hs03385650_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC007625.1 AAH07625.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
L79912.1 AAL40084.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication PUSL1 LINC01342 LOC105378948 SDF4 SCNN1D FAM132A CPTP TTLL10-AS1 RNF223 TAS1R3 TNFRSF18 LOC100288175 B3GALT6 C1orf159 MIR6727 MIR200A MIR429 TTLL10 TNFRSF4 UBE2J2 MIR6726 ACAP3 MIR200B AGRN CPSF3L
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss CCNL2 HES4 SCNN1D FAM132A MIB2 LINC00115 TTLL10-AS1 FAM87B LOC102724312 LOC148413 DVL1 FNDC10 TMEM88B B3GALT6 AURKAIP1 CDK11A MIR6727 MIR200A MIR429 NADK TTLL10 FAM41C TNFRSF4 LOC100288069 ATAD3B ANKRD65 MMP23A UBE2J2 MIR6726 SLC35E2 NOC2L LOC284600 ISG15 AGRN MMP23B PERM1 LINC01128 ATAD3A CPSF3L PUSL1 LINC01342 VWA1 LOC105378948 SDF4 SLC35E2B CPTP MXRA8 MIR6808 SAMD11 RNF223 ATAD3C TAS1R3 TMEM240 TNFRSF18 CDK11B LOC100288175 C1orf159 SSU72 MRPL20 LOC107985728 LOC100287934 KLHL17 ACAP3 LOC107985729 MIR200B LOC100130417 PLEKHN1
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss SDF4 B3GALT6 FAM132A UBE2J2
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC100134822 SCNN1D FAM132A MIB2 LINC00115 TTLL10-AS1 FAM87B MIR1302-2 LOC107984841 GNB1 LOC100132287 LOC148413 CFAP74 B3GALT6 MTND2P28 MIR200A OR4F5 MIR429 NADK FAM41C TNFRSF4 ANKRD65 LOC100133331 UBE2J2 MIR6726 LOC101928626 TMEM52 NOC2L LOC284600 ISG15 MIR6859-1 LOC102725121 ATAD3A MORN1 DDX11L1 PUSL1 LINC01342 MXRA8 MIR6808 LOC105378949 RNF223 TNFRSF18 CDK11B FAM138A C1orf159 MTND1P23 SSU72 KLHL17 LOC107985729 LOC105378947 MIR200B LOC105378589 PLEKHN1 CCNL2 LOC729737 HES4 LOC105378592 LOC102724312 OR4F29 DVL1 FNDC10 TMEM88B WASH7P AURKAIP1 LOC100129534 CDK11A MIR6727 LOC105378591 MIR6859-2 TTLL10 OR4F16 LOC100288069 ATAD3B MIR6723 MMP23A SLC35E2 FAAP20 AGRN MMP23B CALML6 PERM1 LINC01128 CPSF3L VWA1 LOC105378948 SDF4 SLC35E2B CPTP PRKCZ SAMD11 ATAD3C TAS1R3 TMEM240 LOC100288175 GABRD LOC100506504 MRPL20 LOC107985728 LOC100287934 SKI ACAP3 LOC100130417
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion PUSL1 LINC01342 VWA1 CCNL2 SDF4 SCNN1D FAM132A CPTP MIB2 MXRA8 MIR6808 TTLL10-AS1 LOC102724312 ATAD3C LOC148413 TAS1R3 TMEM240 TNFRSF18 DVL1 FNDC10 TMEM88B CDK11B B3GALT6 C1orf159 SSU72 AURKAIP1 MIR6727 MRPL20 MIR200A MIR429 TTLL10 TNFRSF4 ATAD3B ANKRD65 UBE2J2 MIR6726 ACAP3 LOC107985729 MIR200B MMP23B ATAD3A CPSF3L
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LINC01342 LOC105378948 SDF4 HES4 FAM132A LINC00115 TTLL10-AS1 SAMD11 FAM87B RNF223 TNFRSF18 LOC100288175 B3GALT6 C1orf159 MIR200A LOC107985728 MIR429 TTLL10 FAM41C TNFRSF4 KLHL17 UBE2J2 NOC2L MIR200B LOC100130417 LOC284600 ISG15 AGRN PLEKHN1 PERM1 LINC01128
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain PUSL1 LINC01342 LOC105378948 CCNL2 SDF4 HES4 SCNN1D FAM132A CPTP MXRA8 MIR6808 TTLL10-AS1 SAMD11 RNF223 LOC148413 TAS1R3 TNFRSF18 DVL1 TMEM88B LOC100288175 B3GALT6 C1orf159 AURKAIP1 MIR6727 MRPL20 MIR200A LOC107985728 MIR429 TTLL10 TNFRSF4 ANKRD65 KLHL17 UBE2J2 MIR6726 ACAP3 NOC2L MIR200B LOC100130417 LOC284600 ISG15 AGRN PLEKHN1 PERM1 CPSF3L
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain LINC01342 MIR429 TTLL10 LOC105378948 SDF4 TNFRSF4 SCNN1D FAM132A TTLL10-AS1 UBE2J2 RNF223 TNFRSF18 MIR200B B3GALT6 C1orf159 MIR200A
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss PUSL1 LINC01342 SDF4 SCNN1D FAM132A CPTP MXRA8 MIR6808 TTLL10-AS1 RNF223 TAS1R3 TNFRSF18 DVL1 B3GALT6 C1orf159 AURKAIP1 MIR6727 MIR200A MIR429 TTLL10 TNFRSF4 UBE2J2 MIR6726 ACAP3 MIR200B CPSF3L
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss TTLL10 TNFRSF18 SDF4 TNFRSF4 B3GALT6 TTLL10-AS1
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain PUSL1 MIR429 TTLL10 SDF4 TNFRSF4 SCNN1D FAM132A TTLL10-AS1 UBE2J2 MIR6726 ACAP3 TNFRSF18 MIR200B B3GALT6 MIR6727 MIR200A CPSF3L

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More Information


Additional Information:

For this assay, SNP(s) [rs112328659] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s) Process(es)


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