Hs04000132_cn

• Gene Symbol: SOCS6
• Assay Reference Genome Location: Chr.18:70313735 on build GRCh38
• Cytoband: 18q22.2

Target Gene Details

• Entrez Gene ID: 9306
• Gene Name: suppressor of cytokine signaling 6
• Gene Aliases: CIS-4, CIS4, HSPC060, SOCS-4, SOCS-6, SOCS4, SSI4, STAI4, STATI4
• Location: Chr.18:70288901-70330199 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SOCS6	NM_004232.3			NP_004223.2
	XM_005266783.3			XP_005266840.1
	XM_017026087.1			XP_016881576.1
	BC020082.1			AAH20082.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv32736	Chr.18:69135149 - 71678611 on Build GRCh38	Gain+Loss	LOC105372179 DOK6 GTSCR1 LOC101927481 LOC101060542 SOCS6 CCDC102B CD226 LINC01541 RTTN
esv34014	Chr.18:70310065 - 70807720 on Build GRCh38	Loss	GTSCR1 LOC101927481 LOC101060542 SOCS6

More Information

Additional Information:

For this assay, SNP(s) [rs567681210] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

defense/immunity protein

Gene Ontology Categories:

Process(es)

negative regulation of protein kinase activity
defense response
JAK-STAT cascade
proteasomal protein catabolic process
protein ubiquitination
cytokine-mediated signaling pathway
regulation of growth
negative regulation of JAK-STAT cascade
negative regulation of T cell activation

Function(s)

protein kinase inhibitor activity
protein binding