Hs04012168_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54055098 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv6544n54	Chr.19:54053137 - 54055630 on Build GRCh38	Loss	VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG6 CACNG7 VSTM1 CACNG8 MIR935
dgv6543n54	Chr.19:54052839 - 54057172 on Build GRCh38	Loss	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	LILRB3 MYADM ZNF665 MBOAT7 MIR520H MIR518C MIR519A1 PRPF31 MIR516B2 MIR520E MIR526A1 VN1R4 FAM90A27P MIR517A ZNF331 MIR372 MIR521-2 CACNG8 MIR935 MIR523 MIR519C MIR517B LILRA5 MIR371A TARM1 NDUFA3 MIR526A2 LOC284379 MIR519E MIR519D LOC105372457 MIR519A2 ZNF761 MIR515-2 ZNF845 MIR515-1 MIR520D DPRX MIR526B MIR518D MIR517C NLRP12 LENG1 ZNF765 MIR1323 TFPT VN1R2 TPM3P9 MIR516B1 MIR527 CACNG7 MIR525 CACNG6 MIR512-1 ZNF525 MIR371B MIR4752 MIR518F ZNF818P OSCAR MIR519B ZNF813 TSEN34 MIR373 MIR516A2 MIR518A2 LILRB2 MIR1283-1 BIRC8 MIR518A1 ZNF677 MIR520F MIR520G MIR498 MIR524 RPS9 LILRA6 MIR520A MIR518B MIR516A1 PRKCG MIR512-2 MIR1283-2 TMC4 VSTM1 CNOT3 MIR522 MIR520C LILRB5 MIR520B MIR521-1 MIR518E
nsv498905	Chr.19:54052271 - 54057395 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG6 VSTM1 PRPF31 OSCAR TARM1 NDUFA3 CACNG8 MIR935 TFPT
nsv819771	Chr.19:54052875 - 54057777 on Build GRCh38	Gain	VSTM1
esv3556612	Chr.19:54051747 - 54057746 on Build GRCh38	Deletion	VSTM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 PRPF31 OSCAR TARM1 NDUFA3 TFPT
nsv435707	Chr.19:54050726 - 54058212 on Build GRCh38	Deletion	VSTM1
esv2718849	Chr.19:54052186 - 54057417 on Build GRCh38	Deletion	VSTM1
esv27833	Chr.19:54052449 - 54057233 on Build GRCh38	Gain	VSTM1
dgv6545n54	Chr.19:54053705 - 54056151 on Build GRCh38	Loss	VSTM1
dgv6546n54	Chr.19:54054016 - 54057172 on Build GRCh38	Loss	VSTM1
nsv828625	Chr.19:54051623 - 54057381 on Build GRCh38	Loss	VSTM1
esv995580	Chr.19:54053790 - 54056986 on Build GRCh38	Gain	VSTM1
nsv820902	Chr.19:54051675 - 54057381 on Build GRCh38	Deletion	VSTM1
nsv1071550	Chr.19:54050645 - 54057446 on Build GRCh38	Deletion	VSTM1
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
nsv956562	Chr.19:54052306 - 54057474 on Build GRCh38	Deletion	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
nsv580137	Chr.19:54053501 - 54058538 on Build GRCh38	Loss	VSTM1
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
esv3644779	Chr.19:54052282 - 54057401 on Build GRCh38	Loss	VSTM1
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	CACNG6 VSTM1 TARM1 CACNG8 MIR935
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 OSCAR TARM1
esv2595621	Chr.19:54052577 - 54057841 on Build GRCh38	Loss	VSTM1
esv2552009	Chr.19:54051426 - 54057890 on Build GRCh38	Deletion	VSTM1
esv987659	Chr.19:54052552 - 54057223 on Build GRCh38	Gain	VSTM1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity