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Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54059425 on build GRCh38
Cytoband
19q13.42
Assay ID Hs04014269_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 NP_001275720.1
NM_001288792.1 NP_001275721.1
NM_001288793.1 NP_001275722.1
NM_198481.3 NP_940883.2
NR_110142.1
XM_011526845.1 XP_011525147.1
XM_011526846.1 XP_011525148.1
XM_011526847.1 XP_011525149.1
XM_011526848.1 XP_011525150.1
XM_011526849.1 XP_011525151.1
XM_017026666.1 XP_016882155.1
AY358542.1 AAQ88906.1
BC100943.2 AAI00944.1
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion VSTM1 PRPF31 OSCAR TARM1 NDUFA3 TFPT
nsv580110 Chr.19:53961144 - 54093354 on Build GRCh38 Gain VSTM1 MIR935 CACNG6 CACNG8 TARM1
nsv2542 Chr.19:54050737 - 54097924 on Build GRCh38 Deletion VSTM1 OSCAR TARM1
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain VSTM1 CACNG7 MIR935 CACNG6 CACNG8
esv3644780 Chr.19:54057724 - 54066399 on Build GRCh38 Gain VSTM1
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR515-1 VN1R4 ZNF525 ZNF761 MIR371B MIR373 MIR520C CACNG8 NDUFA3 MIR522 ZNF818P LILRA5 CACNG7 MIR516A1 MIR520D LILRA6 MIR518E MIR515-2 LOC284379 MIR372 MIR525 ZNF845 MIR526A1 MIR520B MIR4752 MIR527 MIR516B1 MIR526B MIR519A1 MIR516B2 FAM90A27P TARM1 ZNF665 CNOT3 MIR517C MIR520H MIR517A TFPT TSEN34 LILRB2 MIR518F VN1R2 TPM3P9 MIR519D MIR518A1 MYADM MIR519C MIR1323 LENG1 MIR519A2 MIR519E PRKCG ZNF331 PRPF31 MIR518C LILRB3 MIR526A2 BIRC8 DPRX MIR521-1 MIR1283-2 MIR523 LOC105372457 MIR521-2 MIR520G MIR1283-1 TMC4 RPS9 MIR512-2 MIR524 CACNG6 MIR518D MIR517B MIR498 ZNF677 MIR518B MIR520A MIR935 ZNF813 MIR520E MIR371A ZNF765 VSTM1 LILRB5 MIR516A2 NLRP12 MIR518A2 MIR512-1 OSCAR MIR520F MBOAT7 MIR519B
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss VSTM1 PRPF31 MIR935 OSCAR CACNG6 CACNG8 TARM1 NDUFA3 TFPT

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More Information


Additional Information:

For this assay, SNP(s) [rs117366834] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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