Hs04027206_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54055612 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1	4	732	XP_011525147.1
	XM_011526846.1	4	732	XP_011525148.1
	XM_011526847.1	4	732	XP_011525149.1
	XM_011526848.1	4	732	XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv6544n54	Chr.19:54053137 - 54055630 on Build GRCh38	Loss	VSTM1
dgv6542n54	Chr.19:54052839 - 54056151 on Build GRCh38	Loss	VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 VSTM1 CACNG6 CACNG8 MIR935
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	LILRA6 NLRP12 VN1R4 ZNF813 MIR519E LILRA5 PRPF31 MIR520H MIR517B DPRX LILRB3 NDUFA3 TSEN34 TPM3P9 MIR520E ZNF665 LOC105372457 MIR518D MIR520D MIR524 MIR526B OSCAR ZNF845 MIR522 RPS9 MIR520C MIR519D ZNF818P MIR516B2 ZNF761 MIR518A2 MIR1283-1 TMC4 MIR517A MIR512-2 MIR526A1 MIR372 LOC284379 MIR373 CNOT3 MIR519A1 MIR518B TFPT TARM1 VSTM1 MIR4752 MIR520B MYADM MIR521-2 MIR516A1 CACNG7 MIR526A2 MIR520F MBOAT7 MIR518A1 ZNF765 ZNF677 MIR518F LENG1 MIR521-1 ZNF525 LILRB2 MIR519B MIR523 MIR515-1 MIR1323 MIR516B1 PRKCG MIR371B MIR1283-2 MIR519C MIR519A2 VN1R2 MIR518C MIR520G MIR935 MIR520A FAM90A27P MIR512-1 MIR525 MIR498 MIR516A2 MIR517C LILRB5 MIR371A CACNG6 CACNG8 MIR515-2 MIR527 MIR518E ZNF331 BIRC8
nsv498905	Chr.19:54052271 - 54057395 on Build GRCh38	Loss	VSTM1
nsv819771	Chr.19:54052875 - 54057777 on Build GRCh38	Gain	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT TARM1 VSTM1 OSCAR CACNG6 CACNG8 PRPF31 MIR935 NDUFA3
esv3556612	Chr.19:54051747 - 54057746 on Build GRCh38	Deletion	VSTM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT TARM1 VSTM1 OSCAR PRPF31 NDUFA3
nsv435707	Chr.19:54050726 - 54058212 on Build GRCh38	Deletion	VSTM1
esv2718849	Chr.19:54052186 - 54057417 on Build GRCh38	Deletion	VSTM1
esv27833	Chr.19:54052449 - 54057233 on Build GRCh38	Gain	VSTM1
dgv6545n54	Chr.19:54053705 - 54056151 on Build GRCh38	Loss	VSTM1
dgv6546n54	Chr.19:54054016 - 54057172 on Build GRCh38	Loss	VSTM1
nsv828625	Chr.19:54051623 - 54057381 on Build GRCh38	Loss	VSTM1
esv995580	Chr.19:54053790 - 54056986 on Build GRCh38	Gain	VSTM1
nsv820902	Chr.19:54051675 - 54057381 on Build GRCh38	Deletion	VSTM1
nsv1071550	Chr.19:54050645 - 54057446 on Build GRCh38	Deletion	VSTM1
nsv956562	Chr.19:54052306 - 54057474 on Build GRCh38	Deletion	VSTM1
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
nsv580137	Chr.19:54053501 - 54058538 on Build GRCh38	Loss	VSTM1
esv3644779	Chr.19:54052282 - 54057401 on Build GRCh38	Loss	VSTM1
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	TARM1 VSTM1 CACNG6 CACNG8 MIR935
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	TARM1 VSTM1 OSCAR
esv2595621	Chr.19:54052577 - 54057841 on Build GRCh38	Loss	VSTM1
esv2552009	Chr.19:54051426 - 54057890 on Build GRCh38	Deletion	VSTM1
esv987659	Chr.19:54052552 - 54057223 on Build GRCh38	Gain	VSTM1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity