Hs04027206_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54055612 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1	4	732	XP_011525147.1
	XM_011526846.1	4	732	XP_011525148.1
	XM_011526847.1	4	732	XP_011525149.1
	XM_011526848.1	4	732	XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv6544n54	Chr.19:54053137 - 54055630 on Build GRCh38	Loss	VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6 CACNG7 MIR935
dgv6543n54	Chr.19:54052839 - 54057172 on Build GRCh38	Loss	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR520H MIR527 DPRX MIR522 MIR518B LILRA6 MIR520A TFPT MIR519E MIR519D MIR518A2 ZNF813 MIR520G LOC284379 PRKCG RPS9 MIR520E MIR526B MIR526A1 ZNF331 TPM3P9 TSEN34 ZNF818P MIR371A MIR525 PRPF31 CACNG8 MIR519B MIR372 MIR520D MIR518F MIR518C LILRB3 MIR516B2 VSTM1 ZNF665 ZNF761 ZNF845 MIR521-2 MIR516A2 MYADM ZNF765 MIR523 MIR498 CACNG6 MIR373 CACNG7 MIR521-1 MIR935 MIR512-1 FAM90A27P LOC105372457 ZNF525 MIR517C MIR1283-2 BIRC8 MIR518D MIR515-2 NLRP12 MIR4752 MBOAT7 MIR518A1 NDUFA3 LILRB2 MIR1283-1 LILRB5 MIR519A2 MIR520F MIR371B MIR515-1 LILRA5 OSCAR MIR519C MIR517B CNOT3 TMC4 MIR516B1 VN1R4 TARM1 MIR517A MIR526A2 MIR520C MIR512-2 MIR518E MIR516A1 VN1R2 MIR1323 ZNF677 LENG1 MIR519A1 MIR520B MIR524
nsv498905	Chr.19:54052271 - 54057395 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT VSTM1 TARM1 PRPF31 CACNG8 CACNG6 MIR935 OSCAR NDUFA3
nsv819771	Chr.19:54052875 - 54057777 on Build GRCh38	Gain	VSTM1
esv3556612	Chr.19:54051747 - 54057746 on Build GRCh38	Deletion	VSTM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT VSTM1 TARM1 PRPF31 OSCAR NDUFA3
nsv435707	Chr.19:54050726 - 54058212 on Build GRCh38	Deletion	VSTM1
esv2718849	Chr.19:54052186 - 54057417 on Build GRCh38	Deletion	VSTM1
esv27833	Chr.19:54052449 - 54057233 on Build GRCh38	Gain	VSTM1
dgv6545n54	Chr.19:54053705 - 54056151 on Build GRCh38	Loss	VSTM1
dgv6546n54	Chr.19:54054016 - 54057172 on Build GRCh38	Loss	VSTM1
nsv828625	Chr.19:54051623 - 54057381 on Build GRCh38	Loss	VSTM1
esv995580	Chr.19:54053790 - 54056986 on Build GRCh38	Gain	VSTM1
nsv820902	Chr.19:54051675 - 54057381 on Build GRCh38	Deletion	VSTM1
nsv1071550	Chr.19:54050645 - 54057446 on Build GRCh38	Deletion	VSTM1
nsv9750	Chr.19:54049927 - 54058628 on Build GRCh38	Gain	VSTM1
nsv956562	Chr.19:54052306 - 54057474 on Build GRCh38	Deletion	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
nsv580137	Chr.19:54053501 - 54058538 on Build GRCh38	Loss	VSTM1
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
esv3644779	Chr.19:54052282 - 54057401 on Build GRCh38	Loss	VSTM1
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 TARM1 CACNG8 CACNG6 MIR935
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	VSTM1 TARM1 OSCAR
esv2595621	Chr.19:54052577 - 54057841 on Build GRCh38	Loss	VSTM1
esv2552009	Chr.19:54051426 - 54057890 on Build GRCh38	Deletion	VSTM1
esv987659	Chr.19:54052552 - 54057223 on Build GRCh38	Gain	VSTM1

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity