Hs04202471_cn

• Gene Symbol: SLC35E2B
• Assay Reference Genome Location: Chr.1:1678898 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 728661
• Gene Name: solute carrier family 35 member E2B
• Gene Aliases: SLC35E2
• Location: Chr.1:1661478-1692804 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SLC35E2B	NM_001110781.2			NP_001104251.1
	NM_001290264.1			NP_001277193.1
	XM_011542072.1			XP_011540374.1
	AB007916.3
	AK125619.1
	AK307886.1
	BC110653.1			AAI10654.1
	BG328537.1
	CR936618.1			CAI56761.1
	DA794179.1
	DB450858.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv37n54	Chr.1:1663759 - 1696548 on Build GRCh38	Loss	SLC35E2B
esv3585012	Chr.1:1677771 - 1684388 on Build GRCh38	Gain	SLC35E2B
dgv5n111	Chr.1:1575421 - 1823403 on Build GRCh38	Deletion	NADK MMP23A FNDC10 CDK11B MIB2 GNB1 SLC35E2 SLC35E2B MMP23B CDK11A
dgv8n100	Chr.1:1569349 - 1741152 on Build GRCh38	Loss	MMP23A FNDC10 SSU72 CDK11B MIB2 SLC35E2 SLC35E2B MMP23B CDK11A
esv3575582	Chr.1:1624086 - 1721336 on Build GRCh38	Gain	MMP23A CDK11B MIB2 SLC35E2B MMP23B CDK11A
esv3585010	Chr.1:1670280 - 1751138 on Build GRCh38	Loss	MMP23A SLC35E2 SLC35E2B CDK11A
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	C1orf159 SSU72 LOC148413 GNB1 DDX11L1 LOC105378947 LOC105378948 B3GALT6 MIR6859-2 LOC102725121 LOC729737 ACAP3 LOC100129534 DVL1 MTND1P23 LOC107984841 TNFRSF18 NOC2L MIB2 WASH7P MIR1302-2 HES4 MRPL20 TTLL10-AS1 OR4F16 MIR429 MIR200B LOC100134822 CPTP TAS1R3 UBE2J2 SLC35E2 LOC105378592 FAM41C MIR200A OR4F29 SKI LOC100506504 LOC100130417 AURKAIP1 PERM1 SDF4 CFAP74 SLC35E2B KLHL17 OR4F5 LOC100288175 LOC102724312 PUSL1 ATAD3C CALML6 LOC100133331 LOC100288069 LOC105378589 MIR6727 TTLL10 MIR6808 LOC105378591 LOC105378949 LINC00115 TMEM240 GABRD ANKRD65 ISG15 PLEKHN1 LOC100132287 LINC01128 LOC107985728 LOC100287934 CDK11A MMP23A SAMD11 NADK LINC01342 ATAD3B TMEM88B TNFRSF4 MIR6726 MMP23B MIR6723 MIR6859-1 CPSF3L CDK11B AGRN ATAD3A PRKCZ FAM87B LOC107985729 VWA1 MTND2P28 TMEM52 CCNL2 LOC101928626 FAM138A FNDC10 MXRA8 MORN1 RNF223 LOC284600 FAAP20 SCNN1D FAM132A
nsv1160797	Chr.1:1566216 - 1805918 on Build GRCh38	Duplication	NADK MMP23A FNDC10 SSU72 CDK11B MIB2 GNB1 SLC35E2 SLC35E2B MMP23B CDK11A
dgv2e199	Chr.1:1653096 - 1721890 on Build GRCh38	Deletion	MMP23A CDK11B SLC35E2B CDK11A
esv2760410	Chr.1:1565561 - 1756248 on Build GRCh38	Gain+Loss	NADK MMP23A FNDC10 SSU72 CDK11B MIB2 SLC35E2 SLC35E2B MMP23B CDK11A
esv3585008	Chr.1:1663929 - 1681002 on Build GRCh38	Loss	SLC35E2B
esv3585007	Chr.1:1647187 - 1714507 on Build GRCh38	Loss	MMP23A CDK11B SLC35E2B CDK11A
nsv950516	Chr.1:1663141 - 1715961 on Build GRCh38	Deletion	MMP23A SLC35E2B CDK11A
esv27786	Chr.1:1632502 - 1752267 on Build GRCh38	Gain	NADK MMP23A CDK11B SLC35E2 SLC35E2B MMP23B CDK11A
nsv545022	Chr.1:1665581 - 1683909 on Build GRCh38	Loss	SLC35E2B
nsv10161	Chr.1:776731 - 1777210 on Build GRCh38	Gain+Loss	LOC102724312 PUSL1 C1orf159 ATAD3C SSU72 LOC148413 LOC100288069 MIR6727 TTLL10 MIR6808 LOC105378948 LINC00115 TMEM240 B3GALT6 ANKRD65 ACAP3 ISG15 PLEKHN1 DVL1 LINC01128 LOC107985728 LOC100287934 CDK11A MMP23A TNFRSF18 NOC2L MIB2 SAMD11 HES4 NADK MRPL20 TTLL10-AS1 MIR429 LINC01342 ATAD3B TMEM88B MIR200B TNFRSF4 CPTP MIR6726 MMP23B TAS1R3 UBE2J2 CPSF3L CDK11B SLC35E2 AGRN ATAD3A FAM41C FAM87B MIR200A LOC107985729 VWA1 CCNL2 LOC100130417 AURKAIP1 FNDC10 PERM1 SDF4 MXRA8 RNF223 SLC35E2B LOC284600 KLHL17 SCNN1D LOC100288175 FAM132A
nsv545026	Chr.1:1671348 - 1706566 on Build GRCh38	Loss	MMP23A SLC35E2B CDK11A
nsv545018	Chr.1:1638499 - 1688102 on Build GRCh38	Loss	CDK11B SLC35E2B
dgv3n67	Chr.1:1653920 - 1735718 on Build GRCh38	Gain	MMP23A CDK11B SLC35E2 SLC35E2B CDK11A
esv2758913	Chr.1:1389149 - 2092899 on Build GRCh38	Gain+Loss	NADK LOC102724312 ATAD3C SSU72 MRPL20 CALML6 ATAD3B LOC148413 TMEM88B GNB1 LOC105378589 MMP23B LOC105378591 LOC105378949 CDK11B TMEM240 SLC35E2 GABRD ATAD3A PRKCZ ANKRD65 LOC107985729 VWA1 TMEM52 CCNL2 CDK11A MMP23A FNDC10 MIB2 CFAP74 SLC35E2B

More Information

Additional Information:

For this assay, SNP(s) [rs74859480] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

secondary carrier transporter