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Gene Symbol
SAMD11
Assay Reference Genome
Location

Chr.1:927795 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04202835_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 148398

Gene Name:

 sterile alpha motif domain containing 11

Gene Aliases:

 MRS

Location:

 Chr.1:925741-944581 on Build GRCh38

Assay Gene Location:

 Within Intron 2
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAMD11 NM_152486.2 NP_689699.2
CN342795.1
JX093066.1
JX093067.1
JX093068.1
JX093069.1
JX093070.1
JX093071.1
JX093072.1
JX093073.1
JX093074.1
JX093075.1
JX093076.1
JX093077.1
JX093078.1
JX093079.1
JX093080.1
JX093081.1
JX093082.1
JX093083.1
JX093084.1
JX093085.1
JX093086.1
JX093087.1
JX093088.1
JX093089.1
JX093090.1
JX093091.1
JX093092.1
JX093093.1
JX093094.1
JX093095.1
JX093096.1
JX093097.1
JX093098.1
JX093099.1
JX093100.1
JX093101.1
JX093102.1
JX093103.1
JX093104.1
JX093105.1
JX093106.1
JX093107.1
JX093108.1
JX093109.1
JX093110.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv2762302 Chr.1:914637 - 1106320 on Build GRCh38 Gain LOC284600 NOC2L KLHL17 PERM1 LOC105378948 LOC100130417 RNF223 SAMD11 C1orf159 LOC100288175 PLEKHN1 HES4 LOC107985728 AGRN ISG15
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss LOC284600 ANKRD65 LOC100130417 MIR6808 RNF223 LOC100506504 OR4F29 MORN1 SKI HES4 FAM132A AGRN LOC100133331 LINC01128 ATAD3A MMP23B LOC105378949 SAMD11 FAAP20 WASH7P MIR200B LOC729737 MIR1302-2 TAS1R3 MRPL20 ACAP3 CDK11A B3GALT6 VWA1 LOC105378592 LOC102724312 UBE2J2 CPSF3L LOC100288175 SCNN1D MIR200A NOC2L MMP23A LOC102725121 FNDC10 FAM87B PLEKHN1 OR4F5 LOC107984841 CCNL2 PRKCZ SSU72 KLHL17 AURKAIP1 MTND2P28 MIR429 GABRD ATAD3B LOC105378591 TMEM88B MXRA8 TNFRSF18 TNFRSF4 LOC100134822 LOC107985728 MIR6859-2 MIB2 SDF4 PUSL1 ATAD3C CFAP74 DDX11L1 PERM1 GNB1 CALML6 LOC100132287 LOC100288069 LOC105378589 SLC35E2B FAM138A NADK TMEM52 FAM41C SLC35E2 LOC105378948 MTND1P23 MIR6726 TTLL10-AS1 MIR6727 DVL1 LINC00115 LOC107985729 ISG15 MIR6859-1 MIR6723 LOC148413 TMEM240 TTLL10 C1orf159 CDK11B LOC101928626 LOC105378947 LOC100129534 CPTP LINC01342 LOC100287934 OR4F16
nsv950451 Chr.1:899421 - 1094520 on Build GRCh38 Deletion LOC284600 NOC2L KLHL17 PERM1 LOC105378948 LOC100130417 RNF223 SAMD11 C1orf159 LOC100288175 PLEKHN1 HES4 LOC107985728 AGRN ISG15
nsv509035 Chr.1:891406 - 985724 on Build GRCh38 Insertion SAMD11 LOC284600 NOC2L KLHL17 PLEKHN1 PERM1 LOC107985728 LOC100130417
dgv9n54 Chr.1:925754 - 952840 on Build GRCh38 Loss SAMD11 NOC2L
nsv428334 Chr.1:874371 - 1220569 on Build GRCh38 Gain MIR200B FAM41C LOC284600 KLHL17 MIR429 LOC105378948 LOC100130417 RNF223 TTLL10-AS1 LOC100288175 TNFRSF18 TNFRSF4 HES4 LOC107985728 AGRN ISG15 MIR200A SDF4 NOC2L PERM1 TTLL10 SAMD11 C1orf159 PLEKHN1 LINC01342
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC284600 ANKRD65 KLHL17 AURKAIP1 MIR429 LOC100130417 ATAD3B MIR6808 RNF223 TMEM88B MXRA8 TNFRSF18 TNFRSF4 HES4 FAM132A LOC107985728 AGRN LINC01128 MIB2 ATAD3A SDF4 PUSL1 ATAD3C PERM1 MMP23B SAMD11 LOC100288069 SLC35E2B NADK MIR200B FAM41C TAS1R3 MRPL20 ACAP3 CDK11A B3GALT6 VWA1 SLC35E2 LOC105378948 LOC102724312 UBE2J2 CPSF3L MIR6726 TTLL10-AS1 LOC100288175 MIR6727 DVL1 SCNN1D LINC00115 LOC107985729 ISG15 MIR200A NOC2L MMP23A FNDC10 LOC148413 TMEM240 FAM87B TTLL10 C1orf159 CDK11B PLEKHN1 CCNL2 CPTP LINC01342 LOC100287934 SSU72
dgv5n100 Chr.1:585989 - 1114424 on Build GRCh38 Gain FAM41C LOC284600 KLHL17 MTND2P28 LOC105378948 LOC100130417 MTND1P23 RNF223 LOC100288175 HES4 LOC107985728 AGRN LINC00115 LOC100133331 LINC01128 ISG15 NOC2L MIR6723 PERM1 FAM87B SAMD11 C1orf159 LOC101928626 PLEKHN1 LOC100288069 LOC105378947 LOC107984841 LOC100287934 OR4F16
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss MIR200B FAM41C LOC284600 KLHL17 B3GALT6 MIR429 LOC105378948 LOC100130417 UBE2J2 RNF223 TTLL10-AS1 LOC100288175 TNFRSF18 TNFRSF4 HES4 FAM132A LOC107985728 AGRN LINC00115 LINC01128 ISG15 MIR200A SDF4 NOC2L PERM1 FAM87B TTLL10 SAMD11 C1orf159 PLEKHN1 LINC01342
dgv1n111 Chr.1:690090 - 939522 on Build GRCh38 Duplication FAM41C LOC284600 LOC100130417 FAM87B SAMD11 LOC100288069 LOC107984841 LOC107985728 LINC00115 LOC100287934 LOC100133331 LINC01128 OR4F16
dgv3n111 Chr.1:783283 - 939522 on Build GRCh38 Duplication FAM41C FAM87B SAMD11 LOC284600 LOC107985728 LINC00115 LOC100130417 LOC100287934 LINC01128
dgv6n54 Chr.1:917392 - 934930 on Build GRCh38 Loss SAMD11 LOC284600 LOC107985728 LOC100130417
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain MIR200B LOC284600 ANKRD65 KLHL17 TAS1R3 MRPL20 AURKAIP1 ACAP3 B3GALT6 MIR429 LOC105378948 LOC100130417 UBE2J2 CPSF3L MIR6808 MIR6726 RNF223 TTLL10-AS1 TMEM88B LOC100288175 MIR6727 MXRA8 TNFRSF18 TNFRSF4 DVL1 HES4 FAM132A SCNN1D LOC107985728 AGRN ISG15 MIR200A SDF4 PUSL1 NOC2L PERM1 LOC148413 TTLL10 SAMD11 C1orf159 PLEKHN1 CCNL2 CPTP LINC01342
nsv544898 Chr.1:924665 - 943937 on Build GRCh38 Gain SAMD11 LOC107985728
nsv832980 Chr.1:848279 - 1007037 on Build GRCh38 Gain FAM41C SAMD11 LOC284600 NOC2L KLHL17 PLEKHN1 PERM1 HES4 LOC107985728 LOC100130417 LINC01128

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More Information


Additional Information:

For this assay, SNP(s) [rs79585663] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:


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