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Gene Symbol
SDF4
Assay Reference Genome
Location

Chr.1:1229592 on build GRCh38
Cytoband
1p36.33
Assay ID Hs04211933_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 51150

Gene Name:

 stromal cell derived factor 4

Gene Aliases:

 Cab45, SDF-4

Location:

 Chr.1:1216908-1232067 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SDF4 NM_016176.3 NP_057260.2
NM_016547.2 NP_057631.1
XM_011541556.1 XP_011539858.1
AF132749.1 AAL75950.1
AF153686.1 AAD51612.1
AF178986.1 AAF44350.1
AK027277.1 BAB55012.1
AK075352.1 BAC11563.1
AK222521.1 BAD96241.1
AK223079.1 BAD96799.1
AK299810.1
AK315517.1
BC006211.2 AAH06211.1
BC008917.2 AAH08917.1
BC011244.1 AAH11244.1
BC022375.1 AAH22375.1
DC405714.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv821698 Chr.1:1228970 - 1234390 on Build GRCh38 Gain B3GALT6 SDF4
nsv1160772 Chr.1:1027585 - 1333467 on Build GRCh38 Duplication ACAP3 RNF223 TTLL10-AS1 TAS1R3 AGRN C1orf159 MIR6726 TNFRSF4 TTLL10 MIR200B TNFRSF18 FAM132A LOC105378948 LINC01342 MIR429 UBE2J2 CPTP PUSL1 B3GALT6 CPSF3L MIR6727 LOC100288175 SDF4 SCNN1D MIR200A
nsv10161 Chr.1:776731 - 1777210 on Build GRCh38 Gain+Loss LOC107985728 ATAD3B RNF223 ATAD3C TAS1R3 AGRN TNFRSF4 LINC01128 MIR200B MRPL20 CCNL2 ISG15 TMEM240 PERM1 SLC35E2 LINC00115 LOC148413 ATAD3A MIR429 MIR6808 B3GALT6 TMEM88B MIR6727 LOC100288175 LOC100288069 SDF4 SCNN1D MIR200A NADK VWA1 LOC100130417 MXRA8 ACAP3 FAM41C TTLL10-AS1 C1orf159 MIR6726 SLC35E2B MMP23B NOC2L KLHL17 AURKAIP1 TTLL10 LOC102724312 TNFRSF18 ANKRD65 MIB2 LOC100287934 SAMD11 FAM132A SSU72 LOC105378948 PLEKHN1 LINC01342 FNDC10 MMP23A UBE2J2 CPTP CDK11B PUSL1 CPSF3L LOC107985729 FAM87B HES4 LOC284600 DVL1 CDK11A
nsv455661 Chr.1:1217251 - 1275912 on Build GRCh38 Loss UBE2J2 B3GALT6 FAM132A SDF4
nsv482937 Chr.1:10001 - 2368561 on Build GRCh38 Loss RNF223 ATAD3C TAS1R3 MIR6859-2 LINC01128 SKI MIR200B DDX11L1 ISG15 TMEM240 OR4F29 PERM1 LINC00115 MIR429 MIR6808 B3GALT6 TMEM88B LOC100288175 SDF4 SCNN1D MIR200A CFAP74 NADK VWA1 MXRA8 ACAP3 TTLL10-AS1 TMEM52 C1orf159 LOC100133331 MMP23B NOC2L KLHL17 OR4F16 PRKCZ LOC100132287 ANKRD65 OR4F5 LOC105378589 MORN1 LOC100287934 SAMD11 FAM132A SSU72 PLEKHN1 LINC01342 MMP23A CPTP CPSF3L FAM87B LOC284600 FAM138A CALML6 LOC105378949 CDK11A LOC107985728 ATAD3B AGRN MIR1302-2 LOC105378947 LOC100506504 TNFRSF4 MIR6859-1 LOC105378592 LOC101928626 MRPL20 CCNL2 SLC35E2 LOC148413 ATAD3A LOC102725121 FAAP20 MIR6723 MIR6727 LOC100288069 LOC100130417 FAM41C LOC100134822 MIR6726 MTND2P28 SLC35E2B LOC105378591 AURKAIP1 TTLL10 GABRD LOC102724312 GNB1 TNFRSF18 MIB2 LOC105378948 WASH7P FNDC10 LOC100129534 UBE2J2 CDK11B PUSL1 LOC729737 LOC107985729 HES4 DVL1 MTND1P23 LOC107984841
nsv950452 Chr.1:1106921 - 1637538 on Build GRCh38 Deletion ACAP3 ATAD3B ATAD3C TTLL10-AS1 TAS1R3 C1orf159 MIR6726 MMP23B AURKAIP1 TNFRSF4 TTLL10 LOC102724312 MIR200B TNFRSF18 ANKRD65 MIB2 MRPL20 CCNL2 FAM132A TMEM240 SSU72 LINC01342 FNDC10 LOC148413 ATAD3A MIR429 UBE2J2 CPTP CDK11B PUSL1 MIR6808 B3GALT6 TMEM88B CPSF3L LOC107985729 MIR6727 SDF4 SCNN1D MIR200A VWA1 DVL1 MXRA8
nsv517709 Chr.1:817186 - 1275912 on Build GRCh38 Gain+Loss LOC107985728 RNF223 FAM41C TTLL10-AS1 AGRN C1orf159 NOC2L KLHL17 TNFRSF4 LINC01128 TTLL10 MIR200B TNFRSF18 SAMD11 FAM132A ISG15 LOC105378948 PLEKHN1 PERM1 LINC01342 LINC00115 MIR429 UBE2J2 B3GALT6 FAM87B LOC100288175 SDF4 HES4 MIR200A LOC284600 LOC100130417
dgv2n67 Chr.1:877618 - 1426500 on Build GRCh38 Gain LOC107985728 ACAP3 RNF223 TTLL10-AS1 TAS1R3 AGRN C1orf159 MIR6726 NOC2L KLHL17 AURKAIP1 TNFRSF4 TTLL10 MIR200B TNFRSF18 ANKRD65 MRPL20 SAMD11 CCNL2 FAM132A ISG15 LOC105378948 PLEKHN1 PERM1 LINC01342 LOC148413 MIR429 UBE2J2 CPTP PUSL1 MIR6808 B3GALT6 TMEM88B CPSF3L MIR6727 LOC100288175 SDF4 SCNN1D HES4 MIR200A LOC284600 DVL1 LOC100130417 MXRA8
nsv1003578 Chr.1:1068249 - 1282706 on Build GRCh38 Gain RNF223 FAM132A LOC105378948 TTLL10-AS1 C1orf159 LINC01342 MIR429 UBE2J2 B3GALT6 TNFRSF4 TTLL10 SDF4 SCNN1D MIR200A MIR200B TNFRSF18
nsv470680 Chr.1:1070426 - 1378635 on Build GRCh38 Loss ACAP3 RNF223 TTLL10-AS1 TAS1R3 C1orf159 MIR6726 AURKAIP1 TNFRSF4 TTLL10 MIR200B TNFRSF18 FAM132A LINC01342 MIR429 UBE2J2 CPTP PUSL1 MIR6808 B3GALT6 CPSF3L MIR6727 SDF4 SCNN1D MIR200A DVL1 MXRA8
nsv544956 Chr.1:1171093 - 1241217 on Build GRCh38 Loss B3GALT6 TNFRSF4 TTLL10 TTLL10-AS1 SDF4 TNFRSF18
nsv469848 Chr.1:1146082 - 1322235 on Build GRCh38 Gain ACAP3 FAM132A TTLL10-AS1 MIR6726 MIR429 UBE2J2 PUSL1 B3GALT6 CPSF3L TNFRSF4 TTLL10 MIR6727 SDF4 SCNN1D MIR200A MIR200B TNFRSF18

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