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See other CD44 CNV Assays ›
Gene Symbol
CD44
Assay Reference Genome
Location

Chr.11:35152722 on build GRCh38
Cytoband
11p13
Assay ID Hs04402005_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

960

Gene Name:

CD44 molecule (Indian blood group)

Gene Aliases:

CDW44, CSPG8, ECMR-III, HCELL, HUTCH-I, IN, LHR, MC56, MDU2, MDU3, MIC4, Pgp1

Location:

Chr.11:35138870-35232402 on Build GRCh38

Assay Gene Location:

Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CD44 NM_000610.3 NP_000601.3
NM_001001389.1 NP_001001389.1
NM_001001390.1 NP_001001390.1
NM_001001391.1 NP_001001391.1
NM_001001392.1 NP_001001392.1
NM_001202555.1 NP_001189484.1
NM_001202556.1 NP_001189485.1
NM_001202557.1 NP_001189486.1
XM_005253231.2 XP_005253288.1
XM_005253232.2 XP_005253289.1
XM_005253233.2 XP_005253290.1
XM_005253234.2 XP_005253291.1
XM_005253235.2 XP_005253292.1
XM_005253238.2 XP_005253295.1
XM_005253239.2 XP_005253296.1
XM_005253240.2 XP_005253297.1
XM_006718388.1 XP_006718451.1
XM_006718390.3 XP_006718453.1
XM_011520482.1 XP_011518784.1
XM_011520483.1 XP_011518785.1
XM_011520484.1 XP_011518786.1
XM_011520485.1 XP_011518787.1
XM_011520486.1 XP_011518788.1
XM_011520487.2 XP_011518789.1
XM_011520488.1 XP_011518790.1
XM_011520489.2 XP_011518791.1
XM_017018583.1 XP_016874072.1
XM_017018584.1 XP_016874073.1
XM_017018585.1 XP_016874074.1
AF098641.1 AAC70782.1
AJ251595.1 CAB61878.1
AK290424.1
AK297776.1
AL832642.2 CAD89965.1
AY101192.1 AAM50040.1
AY101193.1 AAM50041.1
BC004372.1 AAH04372.1
BC052287.1 AAH52287.1
BC067348.1 AAH67348.1
EF581837.1
FJ216964.1
M24915.1 AAA35674.1
M25078.1 AAA36138.1
M59040.1 AAA51950.1
S66400.1 AAB27917.1
U40373.1 AAA82949.1
X55150.1 CAA38951.1
X56794.1 CAA40133.1
X66733.1 CAA47271.1

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
esv2759818 Chr.11:35008386 - 35217031 on Build GRCh38 Loss LOC100507144 CD44
nsv1042014 Chr.11:34919190 - 37195907 on Build GRCh38 Loss PRR5L RAG1 RAG2 C11orf74 FJX1 PDHX TRAF6 LOC101928510 MIR1343 TRIM44 LOC100507144 COMMD9 SLC1A2 LDLRAD3 PAMR1 MIR3973 CD44
esv3625922 Chr.11:35148319 - 35190916 on Build GRCh38 Loss CD44
nsv508623 Chr.11:35073386 - 35181816 on Build GRCh38 Deletion LOC100507144 CD44

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More Information


Set Membership:

Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Function(s) Process(es)

cell-matrix adhesion
single organismal cell-cell adhesion
extracellular matrix disassembly
extracellular matrix organization
hyaluronan catabolic process
positive regulation of peptidyl-serine phosphorylation
positive regulation of heterotypic cell-cell adhesion
negative regulation of apoptotic process
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
negative regulation of DNA damage response, signal transduction by p53 class mediator
cellular response to fibroblast growth factor stimulus
positive regulation of peptidyl-tyrosine phosphorylation
leukocyte migration
cartilage development
interferon-gamma-mediated signaling pathway
positive regulation of ERK1 and ERK2 cascade
monocyte aggregation
positive regulation of monocyte aggregation
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
cytokine receptor activity
protein binding
collagen binding
hyaluronic acid binding

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