Hs04488756_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54059003 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG6 CACNG8 VSTM1 TARM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	OSCAR NDUFA3 TFPT VSTM1 TARM1 PRPF31
nsv182	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	OSCAR VSTM1 TARM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG6 CACNG8 CACNG7 VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR512-1 MIR520B MIR515-2 MIR517C MIR372 LILRA6 MIR518E MIR518A1 MIR512-2 MIR524 TFPT MIR516A1 MIR4752 ZNF331 VN1R4 LILRB5 TMC4 PRKCG MIR516A2 MIR935 MIR516B2 LOC105372457 MIR526A1 MIR520C MIR525 MIR517B MIR520G MIR1283-1 ZNF765 MIR519E MIR520E MIR520A PRPF31 MBOAT7 CNOT3 CACNG8 CACNG7 MIR521-2 MIR526A2 ZNF665 MIR517A MIR518F MYADM MIR520H LENG1 MIR520F LILRB3 NDUFA3 ZNF845 MIR371B MIR373 MIR519C ZNF813 MIR1323 RPS9 MIR518A2 MIR371A ZNF761 MIR519A2 TPM3P9 OSCAR LOC284379 ZNF677 NLRP12 DPRX MIR519D MIR527 MIR518C MIR526B TARM1 MIR522 MIR520D MIR519B MIR521-1 CACNG6 MIR498 LILRA5 MIR523 VSTM1 LILRB2 VN1R2 ZNF818P MIR515-1 TSEN34 BIRC8 MIR519A1 MIR518B MIR516B1 MIR518D FAM90A27P ZNF525 MIR1283-2
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 OSCAR CACNG6 NDUFA3 CACNG8 TFPT VSTM1 TARM1 PRPF31

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity