Hs04488756_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54059003 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TARM1 OSCAR PRPF31 TFPT NDUFA3 VSTM1
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	TARM1 CACNG6 VSTM1 CACNG8 MIR935
nsv2542	Chr.19:54050737 - 54097924 on Build GRCh38	Deletion	TARM1 OSCAR VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG6 VSTM1 CACNG8 MIR935 CACNG7
esv3644780	Chr.19:54057724 - 54066399 on Build GRCh38	Gain	VSTM1
dgv663e199	Chr.19:54051591 - 54059132 on Build GRCh38	Deletion	VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	VN1R4 MIR523 OSCAR LILRB2 MIR518A2 LOC284379 LILRB5 MIR520B MIR518B CACNG8 TMC4 DPRX MIR4752 ZNF665 TPM3P9 MIR519A1 MIR516A2 MIR519D MIR518C MIR519C MIR517C MIR372 MIR524 MIR518A1 MIR519A2 MIR526B TARM1 PRPF31 MIR519E CNOT3 NDUFA3 MIR512-2 MIR527 MIR520E ZNF677 LILRB3 MIR521-1 ZNF813 BIRC8 MIR520A LILRA5 MIR520D MIR520C MIR498 VSTM1 MIR371B MIR935 LILRA6 TSEN34 MIR371A CACNG7 MIR515-2 ZNF765 MIR520F TFPT MIR519B ZNF525 MIR526A1 MIR515-1 VN1R2 FAM90A27P MIR518F MIR1323 MIR517B LOC105372457 MIR521-2 MIR518D ZNF845 MIR520G CACNG6 MBOAT7 MIR516A1 MIR520H MYADM MIR373 MIR526A2 MIR512-1 LENG1 ZNF331 NLRP12 ZNF818P MIR1283-1 MIR525 RPS9 MIR516B1 ZNF761 MIR522 MIR516B2 PRKCG MIR517A MIR1283-2 MIR518E
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TARM1 OSCAR PRPF31 TFPT NDUFA3 CACNG6 VSTM1 CACNG8 MIR935

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity