Hs04722441_cn

• Gene Symbol: CHL1
• Assay Reference Genome Location: Chr.3:197854 on build GRCh38
• Cytoband: 3p26.3

Target Gene Details

• Entrez Gene ID: 10752
• Gene Name: cell adhesion molecule L1 like
• Gene Aliases: CALL, L1CAM2
• Location: Chr.3:196588-409417 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CHL1	NM_001253387.1			NP_001240316.1
	NM_006614.3			NP_006605.2
	NR_045572.1	1	212
	XM_006712938.1			XP_006713001.1
	XM_006712939.3			XP_006713002.1
	XM_006712940.3	1	152	XP_006713003.1
	XM_011533292.1	1	211	XP_011531594.1
	XM_011533294.1			XP_011531596.1
	XM_011533295.1	1	211	XP_011531597.1
	XM_011533296.1			XP_011531598.1
	XM_017005566.1			XP_016861055.1
	XM_017005567.1			XP_016861056.1
	XM_017005569.1			XP_016861058.1
	XM_017005570.1	1	152	XP_016861059.1
	XM_017005571.1			XP_016861060.1
	XM_017005572.1			XP_016861061.1
	XM_017005573.1			XP_016861062.1
	AB209329.1			BAD92566.1
	AF002246.1			AAB60937.1
	AK126878.1	1	211
	DA778898.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1010970	Chr.3:188327 - 1623352 on Build GRCh38	Gain	CHL1-AS1 CNTN6 CHL1 LOC101927174 LINC01266
esv2759122	Chr.3:29482 - 756820 on Build GRCh38	Gain+Loss	CHL1-AS1 CHL1 LOC101927174 LINC01266
esv3594873	Chr.3:36658 - 319672 on Build GRCh38	Gain	CHL1 LOC101927174
nsv469898	Chr.3:21733 - 886773 on Build GRCh38	Loss	CHL1-AS1 CHL1 LOC101927174 LOC102723448 LINC01266
esv2667629	Chr.3:39576 - 1039187 on Build GRCh38	Deletion	CHL1-AS1 CNTN6 CHL1 LOC101927174 LINC01266
nsv428412	Chr.3:29467 - 326726 on Build GRCh38	Gain	CHL1 LOC101927174
nsv508206	Chr.3:183024 - 203282 on Build GRCh38	Deletion	CHL1 LOC101927174
nsv1001867	Chr.3:193194 - 252963 on Build GRCh38	Gain	CHL1 LOC101927174
nsv589247	Chr.3:181998 - 209030 on Build GRCh38	Loss	CHL1 LOC101927174
nsv589283	Chr.3:192626 - 321571 on Build GRCh38	Gain	CHL1 LOC101927174
dgv4607n100	Chr.3:18655 - 244340 on Build GRCh38	Gain	CHL1 LOC101927174 LOC102723448
esv3893585	Chr.3:44574 - 267680 on Build GRCh38	Gain	CHL1 LOC101927174
dgv4613n100	Chr.3:52474 - 1799230 on Build GRCh38	Loss	CHL1-AS1 CNTN6 CHL1 LOC101927174 LINC01266
esv2751984	Chr.3:168062 - 253971 on Build GRCh38	Gain	CHL1 LOC101927174
nsv3670	Chr.3:180797 - 207095 on Build GRCh38	Deletion	CHL1 LOC101927174
nsv589246	Chr.3:143598 - 212269 on Build GRCh38	Gain	CHL1 LOC101927174
nsv589242	Chr.3:47730 - 388999 on Build GRCh38	Gain	CHL1-AS1 CHL1 LOC101927174

More Information

• Set Membership: Intragenic, Exonic, DGV Variation

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

neuron migration
cell adhesion
signal transduction
axon guidance
adult locomotory behavior
axon regeneration
exploration behavior
negative regulation of neuron apoptotic process
cognition

Function(s)

protease binding