Hs06576168_cn

• Gene Symbol: ABCA4
• Assay Reference Genome Location: Chr.1:94026704 on build GRCh38
• Cytoband: 1p22.1

Target Gene Details

• Entrez Gene ID: 24
• Gene Name: ATP binding cassette subfamily A member 4
• Gene Aliases: ABC10, ABCR, ARMD2, CORD3, FFM, RMP, RP19, STGD, STGD1
• Location: Chr.1:93992837-94121149 on Build GRCh38
• Assay Gene Location: Within Intron 30

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ABCA4	NM_000350.2			NP_000341.2
	AB210040.1
	AF000148.1			AAC23915.1
	AF001945.1			AAC05632.1
	CR627391.1			CAH10486.1
	U66691.1
	U88667.1			AAC51144.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv516137	Chr.1:93938682 - 94038989 on Build GRCh38	Loss	ABCA4

More Information

Additional Information:

For this assay, SNP(s) [rs79367778] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

ATP-binding cassette (ABC) transporter, primary active transporter, transporter

Gene Ontology Categories:

Process(es)

retinoid metabolic process
phospholipid transfer to membrane
transport
lipid transport
visual perception
phototransduction, visible light
phospholipid translocation
photoreceptor cell maintenance
transmembrane transport

Function(s)

phospholipid-translocating ATPase activity
transporter activity
eye pigment precursor transporter activity
ATP binding
ATPase activity, coupled to transmembrane movement of substances