Hs07121617_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54046740 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG8 TARM1 VSTM1 CACNG6
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 OSCAR PRPF31 TARM1 TFPT VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG8 CACNG7 VSTM1 CACNG6
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG8 VSTM1 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	ZNF761 NDUFA3 MIR372 MIR519B ZNF818P BIRC8 ZNF765 TARM1 MIR521-2 VSTM1 DPRX MIR1283-1 MIR371B LOC105372457 MIR935 RPS9 MYADM MIR519E MIR520G MIR525 FAM90A27P ZNF845 MIR515-2 MIR520H MIR512-1 MIR516B1 MIR520C MIR519A1 CACNG8 NLRP12 PRKCG TFPT MIR523 MBOAT7 MIR517C ZNF525 MIR518F MIR520F MIR521-1 MIR522 MIR517B MIR527 MIR4752 VN1R2 MIR520E MIR518D CACNG6 TMC4 LILRA5 MIR373 LILRB3 MIR526A2 MIR518B MIR516A2 MIR512-2 MIR520B MIR519D MIR516B2 MIR519A2 TSEN34 MIR371A ZNF677 MIR498 CNOT3 CACNG7 MIR520A TPM3P9 MIR520D LILRA6 MIR518C ZNF665 MIR517A MIR524 LENG1 MIR516A1 LILRB5 MIR518A1 MIR1283-2 MIR519C PRPF31 VN1R4 LOC284379 MIR518E MIR526B OSCAR LILRB2 MIR518A2 ZNF813 MIR515-1 MIR1323 ZNF331 MIR526A1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 OSCAR MIR935 CACNG8 PRPF31 TARM1 TFPT VSTM1 CACNG6

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity