Hs07121617_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54046740 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	PRPF31 TARM1 VSTM1 TFPT OSCAR NDUFA3
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	CACNG6 TARM1 VSTM1 MIR935 CACNG8
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG6 VSTM1 CACNG8
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG6 CACNG7 VSTM1 MIR935 CACNG8
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	RPS9 DPRX MIR512-1 MIR518D ZNF331 MIR520C TFPT OSCAR MIR519A1 TPM3P9 MIR371A ZNF761 MIR519A2 MIR517B MIR526A1 MIR525 CACNG6 MIR527 MIR516B1 MIR519B MIR526B MBOAT7 MIR512-2 TMC4 MIR371B MIR520A MIR518A2 ZNF818P LILRA5 PRKCG MIR526A2 MIR519D VSTM1 ZNF525 MIR520B LOC105372457 MIR373 LILRA6 MIR1323 MIR498 ZNF845 NLRP12 MIR519C LILRB5 LILRB2 MIR515-2 MIR1283-2 MIR516B2 MIR517A MIR516A2 MIR516A1 MIR521-1 MIR520H ZNF665 CACNG7 VN1R4 MIR519E TARM1 MIR518C MIR520F MIR524 BIRC8 VN1R2 ZNF677 MIR935 MIR520G MIR521-2 CACNG8 MIR1283-1 MIR518F LENG1 PRPF31 MIR515-1 MIR520D LOC284379 MIR522 MIR372 ZNF765 FAM90A27P CNOT3 NDUFA3 MIR517C MIR523 ZNF813 MIR518B MYADM MIR518E TSEN34 MIR4752 MIR520E LILRB3 MIR518A1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG6 PRPF31 TARM1 VSTM1 TFPT OSCAR MIR935 CACNG8 NDUFA3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity