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Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54047921 on build GRCh38
Cytoband
19q13.42
Assay ID Hs07126267_cn
Size
Availability Made To Order
Catalog # 4400291
Price 4,505.00
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4505.0
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 NP_001275720.1
NM_001288792.1 NP_001275721.1
NM_001288793.1 NP_001275722.1
NM_198481.3 NP_940883.2
NR_110142.1
XM_011526845.1 XP_011525147.1
XM_011526846.1 XP_011525148.1
XM_011526847.1 XP_011525149.1
XM_011526848.1 XP_011525150.1
XM_011526849.1 XP_011525151.1
XM_017026666.1 XP_016882155.1
AY358542.1 AAQ88906.1
BC100943.2 AAI00944.1
BQ446114.1
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion TARM1 PRPF31 VSTM1 OSCAR TFPT NDUFA3
nsv580110 Chr.19:53961144 - 54093354 on Build GRCh38 Gain TARM1 CACNG8 MIR935 VSTM1 CACNG6
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain CACNG8 MIR935 VSTM1 CACNG6 CACNG7
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR371B MIR522 MIR519A1 PRPF31 MIR520D MIR520C TPM3P9 BIRC8 LILRA6 VN1R4 MIR373 MIR512-2 ZNF818P VN1R2 MIR524 MIR523 CACNG7 LENG1 LILRB3 LILRA5 ZNF665 TSEN34 CACNG8 MIR516B1 LOC105372457 TMC4 MIR519E RPS9 MIR520A FAM90A27P LILRB2 MIR517A MIR1323 MIR935 MYADM MIR520H OSCAR TFPT LOC284379 MIR520G MIR516A2 MIR519A2 MIR1283-1 MIR521-1 MIR519C MIR516B2 MIR515-2 ZNF845 LILRB5 MBOAT7 MIR526A1 MIR518D MIR526B NDUFA3 MIR520E NLRP12 MIR518A1 MIR519D ZNF525 ZNF331 MIR518E MIR516A1 TARM1 CNOT3 MIR518A2 MIR517B MIR520B MIR498 VSTM1 CACNG6 MIR518F MIR515-1 MIR521-2 PRKCG MIR371A MIR1283-2 MIR512-1 ZNF761 MIR527 MIR525 MIR519B MIR520F ZNF677 MIR517C MIR518C ZNF765 MIR4752 MIR526A2 MIR372 DPRX MIR518B ZNF813
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss TARM1 CACNG8 MIR935 PRPF31 VSTM1 OSCAR CACNG6 TFPT NDUFA3

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More Information


Additional Information:

For this assay, SNP(s) [rs72626273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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