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Gene Symbol
VSTM1
Assay Reference Genome
Location

Chr.19:54047921 on build GRCh38
Cytoband
19q13.42
Assay ID Hs07126267_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 284415

Gene Name:

 V-set and transmembrane domain containing 1

Gene Aliases:

 SIRL-1, SIRL1, UNQ3033

Location:

 Chr.19:54040825-54063966 on Build GRCh38

Assay Gene Location:

 Within Intron 7
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VSTM1 NM_001288791.1 NP_001275720.1
NM_001288792.1 NP_001275721.1
NM_001288793.1 NP_001275722.1
NM_198481.3 NP_940883.2
NR_110142.1
XM_011526845.1 XP_011525147.1
XM_011526846.1 XP_011525148.1
XM_011526847.1 XP_011525149.1
XM_011526848.1 XP_011525150.1
XM_011526849.1 XP_011525151.1
XM_017026666.1 XP_016882155.1
AY358542.1 AAQ88906.1
BC100943.2 AAI00944.1
BQ446114.1
DQ479397.1
FJ584316.1
FJ584317.1
FJ584318.1
FJ584319.1
FJ584320.1
FJ882051.1
FN398145.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv458782 Chr.19:53961144 - 54093354 on Build GRCh38 Gain MIR935 CACNG8 VSTM1 CACNG6 TARM1
nsv510773 Chr.19:54017180 - 54132236 on Build GRCh38 Deletion NDUFA3 OSCAR TFPT PRPF31 VSTM1 TARM1
nsv1063127 Chr.19:53926876 - 54068977 on Build GRCh38 Gain MIR935 CACNG8 VSTM1 CACNG7 CACNG6
esv2718812 Chr.19:53184636 - 54322450 on Build GRCh38 Deletion MIR498 MIR516B2 ZNF765 VN1R2 MIR519C MIR525 MBOAT7 TMC4 ZNF331 FAM90A27P MIR519D MIR518D ZNF761 MIR520F MIR515-2 MIR4752 MIR519A2 PRKCG MIR518A1 MIR373 MIR518C MIR517C MIR526A1 CACNG8 LILRA6 VSTM1 MIR1283-1 ZNF818P MIR520B MIR521-2 MIR517A MIR519E MYADM BIRC8 MIR1323 VN1R4 MIR371B RPS9 LOC105372457 MIR520H ZNF813 MIR1283-2 TARM1 MIR520E MIR516A1 LOC284379 ZNF665 LILRA5 DPRX ZNF845 MIR518F MIR521-1 ZNF677 MIR519B NLRP12 MIR527 NDUFA3 MIR518B OSCAR MIR520D MIR520A MIR520C LILRB2 MIR517B MIR522 LENG1 PRPF31 MIR523 TSEN34 CACNG7 LILRB5 MIR516B1 MIR520G MIR518E MIR935 LILRB3 MIR518A2 TFPT MIR515-1 MIR516A2 MIR526A2 MIR371A MIR512-1 MIR512-2 CACNG6 MIR372 ZNF525 MIR519A1 MIR524 TPM3P9 MIR526B CNOT3
nsv833877 Chr.19:53951529 - 54117323 on Build GRCh38 Loss NDUFA3 OSCAR MIR935 TFPT PRPF31 CACNG8 VSTM1 CACNG6 TARM1

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More Information


Additional Information:

For this assay, SNP(s) [rs72626273] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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