Hs07131703_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54044193 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	CACNG8 TARM1 MIR935 VSTM1 CACNG6
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 TARM1 PRPF31 TFPT VSTM1 OSCAR
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG8 CACNG7 MIR935 VSTM1 CACNG6
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG8 VSTM1 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR520B MIR373 ZNF677 MIR498 MIR526A1 MIR518D DPRX MIR520A MIR520F LILRB3 BIRC8 MIR518E MIR516A2 ZNF525 MIR519E MIR519D MIR526B TSEN34 ZNF761 MIR519B MIR1283-1 MIR372 MIR4752 TMC4 MIR526A2 VN1R2 MIR521-1 LILRB2 MIR518C TARM1 MIR518F MIR520C MIR515-1 PRKCG MIR521-2 MIR371A LOC105372457 TFPT RPS9 MIR512-2 MIR519A1 MIR1323 LILRA6 MIR517A OSCAR MIR524 CACNG8 ZNF845 LILRA5 MIR935 CNOT3 MIR516A1 FAM90A27P VN1R4 MIR516B1 VSTM1 ZNF665 NLRP12 MIR516B2 NDUFA3 MIR517B ZNF813 LOC284379 CACNG7 MIR520H CACNG6 MIR512-1 PRPF31 ZNF765 MIR520E ZNF818P LILRB5 MIR1283-2 MIR518A2 ZNF331 MYADM MIR527 MIR518A1 MIR520D MBOAT7 MIR518B LENG1 MIR519C MIR522 MIR515-2 MIR523 MIR517C MIR519A2 TPM3P9 MIR525 MIR520G MIR371B
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG8 NDUFA3 TARM1 PRPF31 TFPT MIR935 VSTM1 CACNG6 OSCAR

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity