Hs07131703_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54044193 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TARM1 VSTM1 TFPT NDUFA3 OSCAR PRPF31
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	TARM1 CACNG8 CACNG6 VSTM1 MIR935
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG8 CACNG6 VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 CACNG8 CACNG6 VSTM1 MIR935
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR1323 MIR1283-1 CACNG8 ZNF331 MIR518A1 MIR935 MIR518B MIR520G MIR371A LENG1 MIR521-2 MIR525 MIR527 MIR518E FAM90A27P MIR520E LILRA5 MIR4752 MBOAT7 MIR520B MIR520H MIR519D MIR526A1 MIR526A2 ZNF813 TSEN34 CNOT3 MIR518F MIR524 MIR519C CACNG6 MIR371B TARM1 MIR518C MIR517A MIR516A2 MIR521-1 NLRP12 LOC105372457 TPM3P9 MIR519B ZNF677 MIR517B PRPF31 BIRC8 VN1R4 MIR520A PRKCG MIR372 MIR516B2 MIR519E MIR498 NDUFA3 MIR519A1 MIR520D ZNF845 MIR519A2 OSCAR MIR520C RPS9 MIR515-2 MIR515-1 ZNF525 DPRX LILRB5 MIR518D MYADM MIR516B1 MIR373 ZNF665 MIR512-1 MIR523 MIR512-2 LILRA6 LOC284379 ZNF761 MIR1283-2 MIR518A2 LILRB2 MIR517C VSTM1 TFPT LILRB3 ZNF765 MIR526B CACNG7 VN1R2 MIR516A1 MIR522 MIR520F ZNF818P TMC4
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TARM1 CACNG8 CACNG6 VSTM1 TFPT NDUFA3 MIR935 OSCAR PRPF31

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity