Hs07131846_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54049808 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 VSTM1 TARM1 OSCAR PRPF31 TFPT
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	CACNG8 VSTM1 MIR935 TARM1 CACNG6
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG8 CACNG7 VSTM1 MIR935 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR519A2 MIR517B MIR520E MIR1323 DPRX CACNG7 MIR935 MIR518B VN1R4 LILRB2 ZNF761 MIR516A2 ZNF665 MIR518F PRPF31 MIR520A MIR519E NDUFA3 MIR516A1 LOC284379 BIRC8 PRKCG MIR524 MIR371A ZNF525 ZNF818P ZNF677 MIR517C OSCAR CNOT3 MIR520B TMC4 MIR519B CACNG6 MIR518A2 NLRP12 MIR372 MIR519D MIR520C MIR520H VSTM1 MIR521-2 MIR520F ZNF765 MIR519A1 LILRB3 MIR515-2 MIR4752 LOC105372457 MIR526A2 TSEN34 MIR373 MIR522 MBOAT7 LENG1 RPS9 CACNG8 LILRB5 MIR521-1 MIR527 MIR523 MIR371B MIR518D MIR526B MIR519C MIR518E MIR525 MYADM ZNF331 TPM3P9 MIR518A1 MIR520G MIR526A1 MIR517A MIR518C ZNF845 LILRA6 MIR516B2 MIR520D MIR498 FAM90A27P ZNF813 TARM1 MIR515-1 VN1R2 MIR1283-2 MIR516B1 LILRA5 MIR1283-1 MIR512-2 MIR512-1 TFPT
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 CACNG8 VSTM1 MIR935 TARM1 OSCAR PRPF31 TFPT CACNG6

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity