Hs07131846_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54049808 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	VSTM1 CACNG6 TARM1 MIR935 CACNG8
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	NDUFA3 VSTM1 TARM1 PRPF31 OSCAR TFPT
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG7 VSTM1 CACNG6 MIR935 CACNG8
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	ZNF818P CACNG7 MIR518F LILRA6 ZNF677 MIR517B LILRB5 MIR518C TSEN34 CNOT3 MIR515-2 MIR1323 MIR516B2 MIR526B TMC4 MIR520G MIR519A1 MIR519D OSCAR LOC105372457 MIR516A1 MIR522 MIR518A2 MYADM MIR526A2 MIR520F LILRB2 VN1R2 BIRC8 MIR518D MIR935 ZNF665 PRPF31 LOC284379 TFPT MIR520E MIR519A2 MIR515-1 MIR516B1 MIR1283-1 CACNG8 MIR512-2 ZNF761 LILRB3 ZNF845 MIR526A1 NDUFA3 PRKCG MIR373 CACNG6 TARM1 MIR498 MIR518B ZNF331 MIR520A MIR519C MIR524 MIR518A1 MIR521-1 MIR371A MIR525 MIR516A2 RPS9 VN1R4 TPM3P9 DPRX MIR512-1 MIR520D MIR520H LENG1 MIR527 MIR521-2 MIR1283-2 MIR371B VSTM1 MIR518E MBOAT7 MIR523 ZNF813 MIR520B MIR517A MIR517C MIR4752 MIR519E MIR519B MIR372 NLRP12 LILRA5 MIR520C ZNF525 FAM90A27P ZNF765
dgv6541n54	Chr.19:54049610 - 54057172 on Build GRCh38	Loss	VSTM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	NDUFA3 VSTM1 CACNG6 TARM1 MIR935 PRPF31 OSCAR CACNG8 TFPT

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity