Hs07138598_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54043833 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	CACNG8 CACNG6 VSTM1 TARM1 MIR935
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 TFPT TARM1 NDUFA3 OSCAR PRPF31
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	CACNG8 CACNG6 VSTM1 CACNG7 MIR935
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG8 CACNG6 VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR522 LILRB3 MIR516A2 LILRA5 ZNF813 MIR518A1 MIR521-2 MIR518C MIR371B MIR1323 LOC284379 MIR524 MIR1283-1 ZNF677 DPRX MIR519D ZNF761 LILRB2 FAM90A27P MIR516B1 CACNG7 TMC4 MIR935 MIR515-1 ZNF331 NLRP12 MIR526A1 MIR519E MIR520H MIR518E ZNF665 VN1R2 LILRB5 MIR520A MBOAT7 MIR527 LENG1 MIR520E VSTM1 TFPT MIR372 TPM3P9 MIR516B2 OSCAR MIR517A MIR526A2 LOC105372457 VN1R4 CNOT3 TSEN34 MIR523 MIR371A MIR519A1 BIRC8 MIR519C MIR518A2 LILRA6 ZNF765 MIR520C MIR1283-2 PRKCG MIR512-2 MIR521-1 MIR373 MIR525 MIR520F MIR526B CACNG6 TARM1 MIR520G RPS9 MIR518F MIR515-2 MIR512-1 MIR519A2 MIR518D MYADM ZNF525 CACNG8 MIR498 MIR520D MIR519B MIR517C NDUFA3 ZNF818P ZNF845 MIR518B MIR516A1 PRPF31 MIR520B MIR517B MIR4752
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	CACNG8 CACNG6 VSTM1 TFPT TARM1 NDUFA3 OSCAR MIR935 PRPF31

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity