Hs07138598_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54043833 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	PRPF31 OSCAR TARM1 VSTM1 NDUFA3 TFPT
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	TARM1 VSTM1 MIR935 CACNG6 CACNG8
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	VSTM1 CACNG6 CACNG8
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	VSTM1 CACNG7 MIR935 CACNG6 CACNG8
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR518B MIR512-1 MIR517A MIR498 ZNF765 MIR525 MIR1283-2 CACNG6 MIR522 MBOAT7 MIR519D MIR517C MIR516B2 ZNF525 TPM3P9 MIR517B CACNG7 NDUFA3 MIR527 MIR526A2 MIR520G MIR512-2 MIR519E MIR373 MIR516A2 MIR519C LILRB3 PRPF31 ZNF845 MIR519A1 CNOT3 MIR523 MIR515-2 PRKCG ZNF761 MIR516B1 MIR521-2 LILRA5 LOC105372457 LOC284379 MIR516A1 DPRX LILRA6 TMC4 VSTM1 MIR935 ZNF331 MIR518C LILRB5 MIR371B TARM1 MIR521-1 LILRB2 NLRP12 TSEN34 MIR518E BIRC8 MIR371A VN1R2 MIR515-1 MIR372 MIR520D MIR526B MIR1283-1 MIR519B MIR520B ZNF818P FAM90A27P MYADM ZNF813 OSCAR MIR518A2 MIR518A1 MIR524 LENG1 VN1R4 MIR526A1 MIR520E MIR1323 MIR4752 MIR519A2 MIR520A MIR520C ZNF665 MIR518F MIR520F RPS9 MIR520H MIR518D CACNG8 ZNF677 TFPT
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	PRPF31 OSCAR TARM1 VSTM1 NDUFA3 MIR935 CACNG6 CACNG8 TFPT

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity