Hs07159384_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54044889 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv458782	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 VSTM1 TARM1 CACNG8 CACNG6
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	VSTM1 NDUFA3 PRPF31 TARM1 TFPT OSCAR
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 VSTM1 CACNG7 CACNG8 CACNG6
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	VSTM1 CACNG8 CACNG6
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MBOAT7 DPRX PRPF31 MIR520A MIR524 LILRB5 MIR512-2 CACNG6 MIR517A MIR373 VN1R2 TPM3P9 LILRA6 MIR521-2 CNOT3 MIR519B LILRB3 MIR526A2 MIR515-1 OSCAR MIR521-1 ZNF845 BIRC8 MIR519E MIR4752 MIR516B2 MIR520G MIR520D RPS9 MIR519D CACNG8 ZNF665 NLRP12 MIR520H MIR525 FAM90A27P MIR522 TMC4 MYADM MIR519A1 MIR1283-1 MIR517C MIR516A2 MIR518A2 MIR371B MIR519C MIR527 LOC105372457 ZNF677 MIR523 CACNG7 ZNF818P ZNF765 MIR520B MIR518C ZNF525 MIR519A2 MIR935 MIR518A1 VN1R4 LENG1 PRKCG NDUFA3 MIR498 MIR520C MIR518F ZNF331 TFPT TSEN34 MIR526A1 MIR1283-2 MIR515-2 ZNF813 MIR526B MIR518B TARM1 MIR371A MIR520E LOC284379 LILRB2 MIR520F LILRA5 MIR518D VSTM1 MIR518E MIR1323 MIR516B1 ZNF761 MIR372 MIR512-1 MIR516A1 MIR517B
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	MIR935 VSTM1 NDUFA3 PRPF31 TARM1 CACNG8 TFPT CACNG6 OSCAR

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity