Hs07159384_cn

• Gene Symbol: VSTM1
• Assay Reference Genome Location: Chr.19:54044889 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 284415
• Gene Name: V-set and transmembrane domain containing 1
• Gene Aliases: SIRL-1, SIRL1, UNQ3033
• Location: Chr.19:54040825-54063966 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
VSTM1	NM_001288791.1			NP_001275720.1
	NM_001288792.1			NP_001275721.1
	NM_001288793.1			NP_001275722.1
	NM_198481.3			NP_940883.2
	NR_110142.1
	XM_011526845.1			XP_011525147.1
	XM_011526846.1			XP_011525148.1
	XM_011526847.1			XP_011525149.1
	XM_011526848.1			XP_011525150.1
	XM_011526849.1			XP_011525151.1
	XM_017026666.1			XP_016882155.1
	AY358542.1			AAQ88906.1
	BC100943.2			AAI00944.1
	BQ446114.1
	DQ479397.1
	FJ584316.1
	FJ584317.1
	FJ584318.1
	FJ584319.1
	FJ584320.1
	FJ882051.1
	FN398145.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	PRPF31 TFPT TARM1 OSCAR VSTM1 NDUFA3
nsv580110	Chr.19:53961144 - 54093354 on Build GRCh38	Gain	MIR935 CACNG6 TARM1 CACNG8 VSTM1
nsv1057516	Chr.19:53986233 - 54046901 on Build GRCh38	Gain	CACNG6 CACNG8 VSTM1
nsv1063127	Chr.19:53926876 - 54068977 on Build GRCh38	Gain	MIR935 CACNG7 CACNG6 CACNG8 VSTM1
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	PRPF31 MIR517C MIR373 NLRP12 MIR520H BIRC8 MIR521-1 ZNF525 MIR524 TSEN34 MIR517B MIR935 MIR518B MIR523 MIR526B MIR521-2 MIR519C FAM90A27P MIR1283-1 MIR519A2 MIR519E ZNF665 ZNF845 MIR518A1 MIR519D MIR520F VSTM1 MIR371A MIR518D MBOAT7 MIR498 DPRX TPM3P9 LILRA6 MIR518A2 MIR520A LENG1 LOC105372457 ZNF813 OSCAR MIR512-1 ZNF761 MIR515-1 MIR520G MIR526A2 LOC284379 TFPT MIR516B2 ZNF331 TMC4 LILRB3 CNOT3 MIR525 MIR371B MIR518F CACNG7 MIR516B1 CACNG6 MIR518C MIR512-2 ZNF677 MIR515-2 PRKCG MIR4752 MIR1283-2 TARM1 ZNF765 MIR520D ZNF818P MYADM MIR520E MIR516A1 MIR517A CACNG8 MIR519B MIR520C LILRB2 MIR526A1 LILRB5 MIR519A1 NDUFA3 MIR527 MIR522 MIR372 LILRA5 VN1R2 MIR518E RPS9 MIR516A2 VN1R4 MIR1323 MIR520B
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	PRPF31 MIR935 TFPT CACNG6 TARM1 CACNG8 OSCAR VSTM1 NDUFA3

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

immunoglobulin receptor superfamily

Gene Ontology Categories:

Process(es)

immune system process

Function(s)

cytokine activity