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See other ATP2B1 CNV Assays ›
Gene Symbol
ATP2B1
Assay Reference Genome
Location

Chr.12:89709199 on build GRCh38
Cytoband
12q21.33
Assay ID Hs07535369_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Target Gene Details

Entrez Gene ID:

490

Gene Name:

ATPase plasma membrane Ca2+ transporting 1

Gene Aliases:

PMCA1, PMCA1kb

Location:

Chr.12:89588049-89709353 on Build GRCh38

Assay Gene Location:

Overlaps Intron 1 - Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ATP2B1 XM_011538407.2 XP_011536709.1

Target Gene Details

Entrez Gene ID:

338758

Gene Name:

long intergenic non-protein coding RNA 936

Gene Aliases:

-

Location:

Chr.12:89708955-89711952 on Build GRCh38

Assay Gene Location:

Within Exon 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
LINC00936 NR_028138.1 1 245

Target Copy Number Variation Details

DGV Version:

Release date: 2016-05-15, GRCh GRCh38
Target
Variation
Location CNV
Subtype
Genes
nsv559720 Chr.12:89709029 - 89709254 on Build GRCh38 Loss LINC00936 ATP2B1
nsv559711 Chr.12:89708524 - 89709389 on Build GRCh38 Gain LINC00936 ATP2B1
dgv2773n54 Chr.12:89708316 - 89709574 on Build GRCh38 Gain LINC00936 ATP2B1
esv28180 Chr.12:89708163 - 89709628 on Build GRCh38 Loss LINC00936 ATP2B1
nsv559705 Chr.12:89702019 - 89713058 on Build GRCh38 Gain LINC00936 ATP2B1
dgv2776n54 Chr.12:89708819 - 89709574 on Build GRCh38 Gain+Loss LINC00936 ATP2B1
dgv2774n54 Chr.12:89708471 - 89709574 on Build GRCh38 Gain+Loss LINC00936 ATP2B1

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More Information


Set Membership:

Intragenic Exonic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

primary active transporter

Gene Ontology Categories:

Function(s) Process(es)

neural retina development
transport
cellular calcium ion homeostasis
brain development
aging
response to cold
ion transmembrane transport
calcium ion transmembrane transport
cellular response to vitamin D
cellular response to corticosterone stimulus
calcium ion export
regulation of cardiac conduction
calcium-transporting ATPase activity
protein binding
calmodulin binding
ATP binding
PDZ domain binding
metal ion binding

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