Genomic Map
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Target Gene Details
Entrez Gene ID: | 79888 |
Gene Name: | lysophosphatidylcholine acyltransferase 1 |
Gene Aliases: |
AGPAT10, AGPAT9, AYTL2, PFAAP3, lpcat |
Location: |
Chr.5:1461427-1523961 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LPCAT1 | NM_024830.3 | 14 | 1626 | NP_079106.3 |
| XM_005248373.3 | 15 | 1534 | XP_005248430.1 | |
| XM_011514132.1 | 14 | 1635 | XP_011512434.1 | |
| XM_011514134.1 | 14 | 1401 | XP_011512436.1 | |
| XM_017009879.1 | 8 | 937 | XP_016865368.1 | |
| AB244719.2 | 14 | 1509 | ||
| AF530061.1 | 5 | 618 | AAQ09945.1 | |
| AK022499.1 | 9 | 805 | BAB14061.1 | |
| AK022505.1 | 9 | 805 | BAB14065.1 | |
| AK090444.1 | 12 | 1105 | BAC03425.1 | |
| AK095552.1 | 3 | 376 | ||
| AK123603.1 | 1 | 1738 | ||
| AL831864.1 | 2 | 168 | CAD38556.1 | |
| BC020166.1 | 12 | 1092 | AAH20166.3 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv461910 | Chr.5:1423790 - 1468172 on Build GRCh38 | Loss |
 LPCAT1
SLC6A3
|
| nsv830187 | Chr.5:1317991 - 1509711 on Build GRCh38 | Loss |
LINC01511
LPCAT1
CLPTM1L
SLC6A3
|
| nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain |
LOC101929895
ZDHHC11B
SLC6A18
SLC12A7
LOC100996325
CEP72
CLPTM1L
LOC100506688
CTD-3080P12.3
TPPP
EXOC3
LINC01511
NKD2
MIR4456
MIR4457
LOC100288152
TRIP13
SLC6A3
MIR4635
ZDHHC11
SLC9A3
TERT
BRD9
LPCAT1
PP7080
SLC6A19
|
| dgv9536n54 | Chr.5:1411297 - 1468172 on Build GRCh38 | Loss |
LPCAT1
SLC6A3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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