Hs00517583_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137035323 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Exon 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2	3	2356	NP_997394.1
	XM_017014717.1	3	1321	XP_016870206.1
	AK093587.1	2	725	BAC04202.1
	AK124899.1	3	2356	BAC85986.1
	BC132809.1
	BC136839.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	TMEM210 SAPCD2 ABCA2 MAN1B1-AS1 CLIC3 LRRC26 C9orf142 PRR31 NPDC1 FUT7 LCNL1 PTGDS LOC101930307 UAP1L1 GRIN1 DPP7 ENTPD2 C9orf139 MIR3621 MAN1B1
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	ABCA2 TRAF2 CLIC3 SSNA1 CYSRT1 NRARP NPDC1 SLC34A3 ENTPD8 MIR4479 DPP7 LCN12 EXD3 C9orf173-AS1 EDF1 MAN1B1 TMEM210 RNF208 SAPCD2 RABL6 C9orf142 MIR4292 TPRN PNPLA7 PRR31 C8G MAMDC4 LCNL1 UAP1L1 ANAPC2 TUBB4B FBXW5 ENTPD2 CCDC183 NELFB PHPT1 NOXA1 CCDC183-AS1 C9orf139 MIR3621 RNF224 STPG3 FAM166A MAN1B1-AS1 LRRC26 NSMF C9orf172 FUT7 TOR4A PTGDS LOC101930307 GRIN1 NDOR1 TMEM203 MIR7114
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	SAPCD2 ABCA2 MAN1B1-AS1 CLIC3 C9orf142 PRR31 NPDC1 C8G FUT7 LCNL1 PTGDS LOC101930307 UAP1L1 DPP7 LCN12 ENTPD2 C9orf139 MAN1B1
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	ABCA2 TRAF2 LCN15 CLIC3 DNLZ SEC16A LCN6 NPDC1 LCN8 LCN10 C9orf163 SNORA17A MIR4479 DPP7 LCN12 EDF1 MIR4674 MAN1B1 TMEM210 SAPCD2 HSPC324 RABL6 C9orf142 MIR4292 PRR31 C8G MAMDC4 LCNL1 UAP1L1 FBXW5 PMPCA LINC01451 NALT1 SDCCAG3 ENTPD2 CCDC183 PHPT1 SNORA17B MIR126 EGFL7 NOTCH1 CCDC183-AS1 MIR4673 C9orf139 MIR3621 FAM69B SNHG7 MAN1B1-AS1 LRRC26 SNAPC4 INPP5E C9orf172 MIR6722 AGPAT2 FUT7 PTGDS LOC101930307 LOC100128593 GRIN1 TMEM141 CARD9
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	TMEM210 SAPCD2 MAN1B1-AS1 LRRC26 SSNA1 NPDC1 FUT7 LOC101930307 UAP1L1 ANAPC2 GRIN1 DPP7 ENTPD2 C9orf139 MIR3621 MAN1B1
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ABCA2 NPDC1 ENTPD2 FUT7 C9orf139
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	ABCA2 TRAF2 LCN15 CLIC3 SSNA1 CYSRT1 LCN6 NRARP NPDC1 LCN8 LCN10 SLC34A3 SNORA17A MIR4479 DPP7 LCN12 EXD3 C9orf173-AS1 EDF1 MAN1B1 TMEM210 RNF208 SAPCD2 HSPC324 RABL6 C9orf142 MIR4292 TPRN PRR31 C8G MAMDC4 LCNL1 UAP1L1 ANAPC2 TUBB4B FBXW5 LINC01451 ENTPD2 CCDC183 NELFB PHPT1 SNORA17B MIR126 EGFL7 CCDC183-AS1 C9orf139 MIR3621 RNF224 FAM69B STPG3 SNHG7 FAM166A MAN1B1-AS1 LRRC26 C9orf172 MIR6722 AGPAT2 FUT7 TOR4A PTGDS LOC101930307 LOC100128593 GRIN1 TMEM141 NDOR1 TMEM203

More Information

• Set Membership: Intragenic, Exonic, DGV Variation