Genomic Map
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Target Gene Details
Entrez Gene ID: | 79888 |
Gene Name: | lysophosphatidylcholine acyltransferase 1 |
Gene Aliases: |
AGPAT10, AGPAT9, AYTL2, PFAAP3, lpcat |
Location: |
Chr.5:1461427-1523961 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LPCAT1 | NM_024830.3 | 14 | 3473 | NP_079106.3 |
| XM_005248373.3 | 15 | 3381 | XP_005248430.1 | |
| XM_011514132.1 | 14 | 3482 | XP_011512434.1 | |
| XM_011514134.1 | 14 | 3248 | XP_011512436.1 | |
| XM_017009879.1 | 8 | 2784 | XP_016865368.1 | |
| AF052162.1 | 1 | 1146 | ||
| AK022499.1 | 9 | 2652 | BAB14061.1 | |
| AK022505.1 | 9 | 2652 | BAB14065.1 | |
| AK090444.1 | 12 | 2952 | BAC03425.1 | |
| AK095552.1 | 3 | 2223 | ||
| AK123603.1 | 1 | 3585 | ||
| AL831864.1 | 2 | 2015 | CAD38556.1 | |
| BC020166.1 | 12 | 2939 | AAH20166.3 | |
| BU539058.1 | 1 | 87 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv461910 | Chr.5:1423790 - 1468172 on Build GRCh38 | Loss |
 LPCAT1
SLC6A3
|
| nsv830187 | Chr.5:1317991 - 1509711 on Build GRCh38 | Loss |
LPCAT1
SLC6A3
CLPTM1L
LINC01511
|
| nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain |
MIR4635
CTD-3080P12.3
ZDHHC11
SLC6A18
LOC100506688
LPCAT1
ZDHHC11B
BRD9
CEP72
PP7080
MIR4456
EXOC3
TRIP13
TPPP
SLC6A3
LINC01511
LOC100288152
TERT
LOC101929895
SLC6A19
MIR4457
NKD2
SLC12A7
LOC100996325
CLPTM1L
SLC9A3
|
| dgv9536n54 | Chr.5:1411297 - 1468172 on Build GRCh38 | Loss |
LPCAT1
SLC6A3
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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