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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88087959 on build GRCh38
Cytoband
2p11.2
Assay ID Hs00868058_cn
Size
Availability Made To Order
Catalog # 4400291
Price
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Within Exon 3
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 3 497 NP_938015.1
XM_005264156.2 3 452 XP_005264213.1
AK091724.1 3 415 BAC03732.1
AL832035.1 3 414 CAI46139.1
AY518933.1 3 394 AAT44535.1
BC126191.1 3 497
BX647878.1 3 416 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain MIR4780 RGPD2 RPIA FOXI3 LOC101928371 MIR4436A KRCC1 LOC101928403 FABP1 THNSL2 EIF2AK3 TEX37 ANKRD36BP2 SMYD1
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK
nsv834289 Chr.2:88083076 - 88251327 on Build GRCh38 Gain FABP1 THNSL2 SMYD1
nsv1130752 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion LOC101927050 IGKV1D-13 MIR4780 FOXI3 LOC101928371 LOC730268 IGKV2-24 KRCC1 IGKV2-29 LOC107985911 MIR4435-1 ANKRD36BP2 SMYD1 IGKV1D-8 IGKV3-20 LINC00152 IGKV1-5 RGPD2 RPIA IGKV3D-15 PLGLB2 MIR4436A LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss MIR4780 RGPD2 RPIA FOXI3 LOC101928371 KRCC1 LOC101928403 FABP1 THNSL2 EIF2AK3 TEX37 ANKRD36BP2 SMYD1
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss IGKV3-20 IGKV1-5 MIR4780 RPIA FOXI3 LOC101928371 IGKV2-24 MIR4436A KRCC1 LOC101928403 FABP1 THNSL2 IGKV2-26 EIF2AK3 TEX37 IGKC IGK ANKRD36BP2 SMYD1
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain KRCC1 FABP1 MIR4780 RGPD2 THNSL2 TEX37 FOXI3 SMYD1

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