Hs00924879_cn

• Gene Symbol: C9orf139
• Assay Reference Genome Location: Chr.9:137031210 on build GRCh38
• Cytoband: 9q34.3

Target Gene Details

• Entrez Gene ID: 401563
• Gene Name: chromosome 9 open reading frame 139
• Gene Aliases: -
• Location: Chr.9:137027464-137037770 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
C9orf139	NM_207511.2			NP_997394.1
	AK124899.1			BAC85986.1

Target Gene Details

• Entrez Gene ID: 2529
• Gene Name: fucosyltransferase 7
• Gene Aliases: FucT-VII
• Location: Chr.9:137030174-137032840 on Build GRCh38
• Assay Gene Location: Within Exon 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FUT7	NM_004479.3	2	1378	NP_004470.1
	AK313124.1	2	1012
	BC074746.2	2	554	AAH74746.2
	BC086312.1	2	1378	AAH86312.1
	U08112.1	2	666	AAA56869.1
	U11282.1	2	666	AAA20468.1
	X78031.1	2	651	CAA54962.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
dgv13007n54	Chr.9:136966179 - 137173890 on Build GRCh38	Loss	PTGDS ENTPD2 MAN1B1 GRIN1 TMEM210 ABCA2 PRR31 LCNL1 LRRC26 MAN1B1-AS1 C9orf139 FUT7 MIR3621 SAPCD2 NPDC1 C9orf142 CLIC3 UAP1L1 DPP7 LOC101930307
nsv524322	Chr.9:136795692 - 137482216 on Build GRCh38	Loss	FBXW5 TMEM203 NSMF MAN1B1-AS1 C9orf139 ENTPD8 FUT7 PHPT1 CCDC183-AS1 ANAPC2 UAP1L1 SSNA1 LOC101930307 NDOR1 ENTPD2 NOXA1 ABCA2 CCDC183 LCNL1 C9orf173-AS1 LRRC26 PNPLA7 NELFB MAMDC4 TOR4A NPDC1 EDF1 FAM166A PTGDS MAN1B1 TRAF2 MIR4292 PRR31 C8G CYSRT1 TUBB4B MIR7114 C9orf172 NRARP MIR3621 TPRN SAPCD2 RNF208 DPP7 MIR4479 EXD3 RABL6 GRIN1 TMEM210 STPG3 RNF224 LCN12 SLC34A3 C9orf142 CLIC3
nsv951206	Chr.9:136944849 - 137114548 on Build GRCh38	Deletion	PTGDS ENTPD2 MAN1B1 ABCA2 PRR31 LCNL1 C8G MAN1B1-AS1 C9orf139 FUT7 LCN12 SAPCD2 NPDC1 C9orf142 CLIC3 UAP1L1 DPP7 LOC101930307
nsv469918	Chr.9:136359865 - 137173890 on Build GRCh38	Loss	FBXW5 SEC16A NALT1 MAN1B1-AS1 C9orf139 FUT7 PHPT1 CARD9 LCN10 CCDC183-AS1 DNLZ UAP1L1 LOC101930307 FAM69B ENTPD2 ABCA2 CCDC183 LCNL1 LRRC26 LCN6 C9orf163 MAMDC4 INPP5E NOTCH1 MIR6722 AGPAT2 SNHG7 NPDC1 EDF1 MIR4673 LOC100128593 MIR4674 PTGDS MAN1B1 TRAF2 MIR4292 LCN15 PRR31 LCN8 C8G SNAPC4 C9orf172 MIR3621 SAPCD2 TMEM141 MIR126 EGFL7 DPP7 MIR4479 RABL6 SNORA17A GRIN1 HSPC324 TMEM210 LINC01451 SNORA17B LCN12 SDCCAG3 C9orf142 CLIC3 PMPCA
esv2761561	Chr.9:137030185 - 137191593 on Build GRCh38	Gain	ENTPD2 MAN1B1 GRIN1 TMEM210 LRRC26 MAN1B1-AS1 C9orf139 FUT7 MIR3621 SAPCD2 NPDC1 ANAPC2 UAP1L1 DPP7 SSNA1 LOC101930307
nsv616004	Chr.9:137014976 - 137053021 on Build GRCh38	Loss	ENTPD2 ABCA2 NPDC1 C9orf139 FUT7
esv2422220	Chr.9:136584135 - 137350098 on Build GRCh38	Deletion	FBXW5 TMEM203 MAN1B1-AS1 C9orf139 FUT7 PHPT1 LCN10 CCDC183-AS1 ANAPC2 UAP1L1 SSNA1 LOC101930307 FAM69B NDOR1 ENTPD2 ABCA2 CCDC183 LCNL1 C9orf173-AS1 LRRC26 LCN6 NELFB MAMDC4 TOR4A MIR6722 AGPAT2 SNHG7 NPDC1 EDF1 LOC100128593 FAM166A PTGDS MAN1B1 TRAF2 MIR4292 LCN15 PRR31 LCN8 C8G CYSRT1 TUBB4B C9orf172 NRARP MIR3621 TPRN SAPCD2 TMEM141 MIR126 RNF208 EGFL7 DPP7 MIR4479 EXD3 RABL6 SNORA17A GRIN1 HSPC324 TMEM210 STPG3 LINC01451 SNORA17B RNF224 LCN12 SLC34A3 C9orf142 CLIC3

More Information

• Set Membership: Intragenic, Exonic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

glycosyltransferase

Gene Ontology Categories:

Process(es)

CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation
leukocyte migration involved in immune response
protein glycosylation
protein N-linked glycosylation
fucosylation
L-fucose catabolic process

Function(s)

fucosyltransferase activity
alpha-(1->3)-fucosyltransferase activity