Genomic Map
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Target Gene Details
Entrez Gene ID: | 6470 |
Gene Name: | serine hydroxymethyltransferase 1 |
Gene Aliases: |
CSHMT, SHMT |
Location: |
Chr.17:18327860-18363563 on Build GRCh38 |
Assay Gene Location: | Within Exon 14 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SHMT1 | NM_001281786.1 | 11 | 1600 | NP_001268715.1 |
| NM_004169.4 | 12 | 1716 | NP_004160.3 | |
| NM_148918.2 | 11 | 1599 | NP_683718.1 | |
| XM_005256767.3 | 13 | 1787 | XP_005256824.1 | |
| XM_011523992.2 | 10 | 1444 | XP_011522294.1 | |
| XM_017024957.1 | 12 | 1541 | XP_016880446.1 | |
| XM_017024958.1 | 12 | 1670 | XP_016880447.1 | |
| XM_017024959.1 | 9 | 1291 | XP_016880448.1 | |
| XM_017024960.1 | 8 | 1168 | XP_016880449.1 | |
| AK223552.1 | 12 | 1647 | BAD97272.1 | |
| AK298415.1 | 11 | 1532 | ||
| BC007979.2 | 12 | 1562 | AAH07979.1 | |
| BC022874.1 | 11 | 1449 | AAH22874.1 | |
| BC038598.1 | 12 | 1573 | AAH38598.1 | |
| L11931.1 | 11 | 1529 | AAA63257.1 | |
| L23928.1 | 11 | 1517 | AAA36018.1 | |
| Y14485.1 | 12 | 1682 | CAB54838.1 | |
| Y14486.1 | 7 | 1827 | CAB54839.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv509653 | Chr.17:18328532 - 18406188 on Build GRCh38 | Insertion |
 SHMT1
MIR6778
EVPLL
|
| nsv833386 | Chr.17:18266947 - 18429412 on Build GRCh38 | Gain |
SHMT1
TOP3A
KRT17P5
MIR6778
SMCR8
FLJ35934
EVPLL
KRT17P2
|
| esv1004827 | Chr.17:18324454 - 18330561 on Build GRCh38 | Deletion |
SHMT1
SMCR8
|
| nsv428333 | Chr.17:18296767 - 18543070 on Build GRCh38 | Gain |
KRT16P1
CCDC144B
LGALS9C
FAM106A
KRT17P5
MIR6778
SMCR8
FLJ35934
KRT17P2
SHMT1
TOP3A
EVPLL
USP32P2
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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