Genomic Map
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Target Gene Details
Entrez Gene ID: | 6472 |
Gene Name: | serine hydroxymethyltransferase 2 |
Gene Aliases: |
GLYA, HEL-S-51e, SHMT |
Location: |
Chr.12:57229573-57234935 on Build GRCh38 |
Assay Gene Location: | Within Exon 9 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SHMT2 | NM_001166356.1 | 7 | 1001 | NP_001159828.1 |
| NM_001166357.1 | 7 | 1093 | NP_001159829.1 | |
| NM_001166358.1 | 7 | 992 | NP_001159830.1 | |
| NM_001166359.1 | 7 | 885 | NP_001159831.1 | |
| NM_005412.5 | 7 | 1031 | NP_005403.2 | |
| NR_029415.1 | 6 | 833 | ||
| NR_029416.1 | 6 | 912 | ||
| NR_029417.1 | 6 | 951 | ||
| NR_048562.1 | 6 | 1041 | ||
| XM_011538675.2 | 7 | 971 | XP_011536977.1 | |
| XM_011538676.2 | 7 | 962 | XP_011536978.1 | |
| XM_011538677.2 | 6 | 872 | XP_011536979.1 | |
| XM_011538678.2 | 6 | 854 | XP_011536980.1 | |
| AK055053.1 | 4 | 1681 | ||
| AK223555.1 | 7 | 893 | BAD97275.1 | |
| AK295941.1 | 6 | 782 | ||
| AK296183.1 | 7 | 845 | ||
| AK297173.1 | 6 | 793 | ||
| AK298231.1 | 6 | 686 | ||
| AK301339.1 | 7 | 758 | ||
| AK301443.1 | 6 | 855 | ||
| AK303827.1 | 6 | 707 | ||
| AK315916.1 | 7 | 1085 | ||
| BC011911.2 | 7 | 835 | AAH11911.1 | |
| BC013677.2 | 7 | 895 | AAH13677.1 | |
| BC032584.1 | 7 | 874 | AAH32584.1 | |
| BC044211.1 | 7 | 871 | AAH44211.1 | |
| BC091501.1 | 6 | 755 | AAH91501.1 | |
| BT006866.1 | 7 | 825 | AAP35512.1 | |
| BX647711.1 | 7 | 952 | CAI46021.1 | |
| BX648847.1 | 5 | 433 | ||
| EU668344.1 | 7 | 835 | ||
| KU178333.1 | 7 | 825 | ||
| KU178334.1 | 6 | 461 | ||
| L11932.1 | 6 | 736 | AAA63258.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv482992 | Chr.12:56206217 - 57706217 on Build GRCh38 | Gain+Loss |
 PRIM1
MIP
CS
R3HDM2
BAZ2A
NACA
SDR9C7
TAC3
DCTN2
MIR1228
LOC101927583
SNORD59B
RDH16
MBD6
RNF41
ATP5B
GLS2
NABP2
PIP4K2C
B4GALNT1
MIR6758
MIR616
RBMS2
GLI1
HBCBP
PTGES3
APOF
STAT2
ARHGAP9
ARHGEF25
NXPH4
STAT6
SLC39A5
IL23A
SLC26A10
HSD17B6
MYO1A
KIF5A
ANKRD52
INHBE
CNPY2
DTX3
SHMT2
COQ10A
MARS
TIMELESS
SNORA105C
LRP1-AS
NEMP1
GPR182
INHBC
NDUFA4L2
STAC3
NAB2
SPRYD4
DDIT3
SNORD59A
LRP1
PAN2
OS9
ZBTB39
|
| nsv519293 | Chr.12:57189889 - 57243810 on Build GRCh38 | Loss |
NDUFA4L2
STAC3
SHMT2
NXPH4
MIR1228
LRP1
|
| nsv952189 | Chr.12:57127118 - 57245617 on Build GRCh38 | Deletion |
NDUFA4L2
STAC3
SHMT2
NXPH4
MIR1228
LRP1
LRP1-AS
|
| dgv96n21 | Chr.12:57139199 - 57243810 on Build GRCh38 | Loss |
NDUFA4L2
STAC3
SHMT2
NXPH4
MIR1228
LRP1
LRP1-AS
|
Back To TopMore Information
Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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