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See other CROCC CNV Assays ›
Gene Symbol
CROCC
Assay Reference Genome
Location

Chr.1:16958787 on build GRCh38
Cytoband
1p36.13
Assay ID Hs02854210_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 9696

Gene Name:

 ciliary rootlet coiled-coil, rootletin

Gene Aliases:

 ROLT

Location:

 Chr.1:16914082-16972979 on Build GRCh38

Assay Gene Location:

 Within Intron 28
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
CROCC NM_014675.4 NP_055490.4
XM_006711058.3 XP_006711121.1
XM_011542468.1 XP_011540770.1
XM_011542470.2 XP_011540772.1
XM_017002913.1 XP_016858402.1
XM_017002914.1 XP_016858403.1
XM_017002915.1 XP_016858404.1
AB007914.2 BAA32290.2
BC126911.1
BC126912.1
DQ139275.1 ABA43896.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv428421 Chr.1:16437838 - 17157486 on Build GRCh38 Gain+Loss RNU1-1 LOC105376796 ESPNP MST1L RNU1-2 LOC100132147 SDHB RNU1-3 MST1P2 LOC102723383 MFAP2 LOC105376805 NECAP2 PADI2 FAM231B ATP13A2 CROCCP2 NBPF1 FAM231A CROCCP3 RNU1-4 SPATA21 CROCC MIR3675
dgv108n100 Chr.1:16850538 - 17010370 on Build GRCh38 Gain LOC105376805 ATP13A2 RNU1-2 CROCC MIR3675 MFAP2
nsv1002599 Chr.1:16912960 - 16968705 on Build GRCh38 Gain CROCC
nsv545672 Chr.1:16856620 - 16973488 on Build GRCh38 Loss LOC105376805 RNU1-2 CROCC MIR3675
dgv127n100 Chr.1:16930810 - 16965387 on Build GRCh38 Loss CROCC
nsv482201 Chr.1:16921950 - 16972979 on Build GRCh38 Gain CROCC
nsv508947 Chr.1:16909817 - 17011115 on Build GRCh38 Insertion ATP13A2 CROCC MFAP2
esv3577752 Chr.1:16539300 - 16959771 on Build GRCh38 Loss ESPNP MST1L RNU1-2 RNU1-3 MST1P2 LOC102723383 LOC105376805 FAM231B CROCCP2 NBPF1 FAM231A RNU1-4 CROCC MIR3675
dgv92n100 Chr.1:16684943 - 17003642 on Build GRCh38 Gain LOC105376805 ESPNP MST1L ATP13A2 RNU1-2 RNU1-4 CROCC LOC102723383 MIR3675 MFAP2
dgv101n100 Chr.1:16756084 - 16959812 on Build GRCh38 Gain LOC105376805 MST1L RNU1-2 CROCC MIR3675
dgv39n100 Chr.1:16451184 - 16965387 on Build GRCh38 Gain RNU1-1 LOC105376796 ESPNP MST1L RNU1-2 LOC100132147 RNU1-3 MST1P2 LOC102723383 LOC105376805 NECAP2 FAM231B CROCCP2 NBPF1 FAM231A CROCCP3 RNU1-4 CROCC MIR3675
nsv834280 Chr.1:16888218 - 17123006 on Build GRCh38 Loss LOC105376805 PADI2 ATP13A2 RNU1-2 SDHB CROCC MFAP2
dgv120n100 Chr.1:16890896 - 16997938 on Build GRCh38 Gain ATP13A2 RNU1-2 CROCC MFAP2
dgv111n100 Chr.1:16864355 - 16968705 on Build GRCh38 Gain LOC105376805 RNU1-2 CROCC
nsv834269 Chr.1:16855283 - 17038531 on Build GRCh38 Loss LOC105376805 ATP13A2 RNU1-2 SDHB CROCC MIR3675 MFAP2

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More Information


Additional Information:

For this assay, SNP(s) [rs527635945] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Gene Ontology Categories:

Function(s) Process(es)


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