Hs03349819_cn

• Gene Symbol: FAAP20
• Assay Reference Genome Location: Chr.1:2209487 on build GRCh38
• Cytoband: 1p36.33

Target Gene Details

• Entrez Gene ID: 199990
• Gene Name: Fanconi anemia core complex associated protein 20
• Gene Aliases: C1orf86, FP7162
• Location: Chr.1:2184460-2212720 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
FAAP20	NM_001282670.1			NP_001269599.1
	AK126870.1			BAC86730.1

Target Gene Details

• Entrez Gene ID: 105378592
• Gene Name: uncharacterized LOC105378592
• Gene Aliases: -
• Location: Chr.1:2207597-2215193 on Build GRCh38
• Assay Gene Location: Overlaps Intron 3 - Exon 4

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
LOC105378592	XM_017003076.1			XP_016858565.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv461727	Chr.1:2151050 - 2251031 on Build GRCh38	Loss	LOC100506504 PRKCZ SKI LOC105378592 FAAP20
nsv482937	Chr.1:10001 - 2368561 on Build GRCh38	Loss	MXRA8 MIR6808 ISG15 LOC105378948 MIR200B ACAP3 MIR1302-2 LOC100288069 HES4 MIR6723 NOC2L MMP23A NADK LOC105378591 TMEM88B LOC105378592 FAM41C MIR200A MMP23B LOC148413 MIR6726 FAM132A MIR6859-2 MTND2P28 LOC107984841 ATAD3C MORN1 LINC01128 FNDC10 ANKRD65 LOC100288175 RNF223 FAAP20 PERM1 MRPL20 GABRD LOC101928626 DDX11L1 ATAD3A SLC35E2 MIR429 LOC105378947 MIR6859-1 CCNL2 FAM87B LINC00115 LINC01342 FAM138A LOC100134822 TNFRSF18 OR4F5 TNFRSF4 PRKCZ CPTP LOC100506504 MIB2 LOC100130417 PUSL1 SLC35E2B AGRN SAMD11 DVL1 LOC100129534 LOC284600 LOC107985728 GNB1 UBE2J2 TMEM240 ATAD3B TTLL10 LOC100133331 LOC102725121 MTND1P23 KLHL17 B3GALT6 TMEM52 AURKAIP1 SKI OR4F29 SSU72 TTLL10-AS1 C1orf159 PLEKHN1 VWA1 SDF4 LOC100287934 TAS1R3 LOC102724312 CALML6 LOC105378949 CDK11A MIR6727 LOC100132287 LOC729737 CDK11B OR4F16 SCNN1D LOC107985729 WASH7P LOC105378589 CFAP74 CPSF3L
nsv951530	Chr.1:2153662 - 2229961 on Build GRCh38	Deletion	LOC100506504 PRKCZ SKI LOC105378592 FAAP20
nsv470682	Chr.1:2188394 - 2378754 on Build GRCh38	Loss	SKI LOC105378592 LOC100129534 FAAP20 MORN1
nsv545067	Chr.1:2208822 - 2263678 on Build GRCh38	Loss	SKI LOC105378592 FAAP20
nsv834557	Chr.1:2117631 - 2311104 on Build GRCh38	Loss	LOC100506504 PRKCZ SKI LOC105378592 FAAP20

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

cellular response to DNA damage stimulus
translesion synthesis
interstrand cross-link repair

Function(s)

protein binding
polyubiquitin binding
ubiquitin binding
metal ion binding
K63-linked polyubiquitin binding