Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 19 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 LIG1
PLA2G4C-AS1
C19orf68
PLA2G4C
ELSPBP1
BSPH1
CABP5
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
ZNF114
FLJ26850
TEAD2
MIR6798
EMP3
CPT1C
CD37
IL4I1
KDELR1
RPL18
SNAR-C3
PRMT1
SNORD35B
SCAF1
NOSIP
SNORD35A
NUP62
BCAT2
LOC100287477
IRF3
ADM5
TSKS
SNORD34
LIG1
PLA2G4C-AS1
DHDH
SNAR-A1
FTL
SIGLEC16
PPP1R15A
SNAR-A8
PTH2
PPFIA3
MIR4751
LOC101059948
SNAR-A13
MIR5088
SPACA4
FLT3LG
ZNF473
KCNJ14
CA11
CCDC114
PLEKHA4
SNAR-G1
TRPM4
LOC105372430
CGB5
RPS11
PNKP
GFY
LHB
RRAS
SNAR-A11
FAM83E
CGB3
ATF5
MIR4750
NTN5
SNAR-D
BCL2L12
FCGRT
LIN7B
PLA2G4C
CGB7
SNORD33
SNRNP70
SEC1P
SNAR-A7
HRC
SNAR-A12
BAX
CGB1
FUT1
SNAR-B1
MIR6799
TMEM143
SNAR-C1
AKT1S1
GRWD1
PTOV1
LOC101928295
CABP5
SNAR-A3
MAMSTR
SNAR-A5
CARD8
CGB2
SNORD32A
CARD8-AS1
RCN3
VRK3
SNAR-A14
PIH1D1
NUCB1
ALDH16A1
FUT2
SNAR-A4
PRRG2
CYTH2
GRIN2D
CGB8
MIR150
BSPH1
KCNA7
SULT2B1
NTF4
SNAR-C4
AP2A1
PTOV1-AS1
SNAR-C5
RUVBL2
SNAR-C2
SLC17A7
FGF21
SNAR-A10
RASIP1
SLC6A16
DKKL1
FUZ
PRR12
IZUMO1
MED25
C19orf68
RPL13A
C19orf73
ELSPBP1
SYNGR4
GYS1
SPHK2
LMTK3
SNAR-A9
PTOV1-AS2
MIR4324
SNAR-G2
HSD17B14
LOC105447645
MIR6800
CCDC155
DBP
SIGLEC11
SNAR-A2
NUCB1-AS1
SNAR-B2
TBC1D17
TULP2
MIR4749
SNAR-A6
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
GRIN2D
CARD8-AS1
LIG1
PLA2G4C-AS1
ZNF114
CCDC114
PLA2G4C
EMP3
KDELR1
C19orf68
TMEM143
ELSPBP1
SYNGR4
CABP5
CARD8
|
| nsv953596 | Chr.19:48120744 - 48134943 on Build GRCh38 | Deletion |
LIG1
|
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Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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