Hs04020482_cn

• Gene Symbol: RCN3
• Assay Reference Genome Location: Chr.19:49533398 on build GRCh38
• Cytoband: 19q13.33

Target Gene Details

• Entrez Gene ID: 57333
• Gene Name: reticulocalbin 3
• Gene Aliases: RLP49
• Location: Chr.19:49527579-49543638 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RCN3	NM_020650.2			NP_065701.2
	XM_005259089.3			XP_005259146.1
	XM_011527143.1			XP_011525445.1
	XM_017027023.1			XP_016882512.1
	AF183423.1			AAG09692.1
	AY195859.1			AAO43054.1
	AY358423.1			AAQ88789.1
	BC013436.1			AAH13436.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv9739	Chr.19:47901840 - 50143063 on Build GRCh38	Gain+Loss	NTN5 SCAF1 SNAR-C1 SIGLEC16 ADM5 TBC1D17 SYNGR4 NOSIP PPP1R15A KCNJ14 PRMT1 MED25 LHB SNAR-A5 PRRG2 SNORD32A SNRNP70 RUVBL2 PLEKHA4 MAMSTR MIR4324 ZNF473 LOC101928295 GRIN2D KDELR1 CGB3 SNAR-A1 BCAT2 SNAR-C4 FUT1 ELSPBP1 TMEM143 VRK3 ALDH16A1 MIR4750 CGB8 SNAR-C2 SPHK2 GYS1 SLC6A16 RRAS RPS11 LOC105372430 GRWD1 IL4I1 NUCB1-AS1 SNAR-C5 C19orf73 CARD8 IRF3 IZUMO1 ZNF114 TULP2 SNORD34 SNAR-A12 MIR6798 SNAR-A14 LOC101059948 HSD17B14 PTOV1-AS2 FUT2 BAX MIR5088 BSPH1 SIGLEC11 SNORD35B LIG1 LOC100287477 CGB7 CCDC114 LMTK3 SNAR-D CGB1 FLJ26850 SLC17A7 CYTH2 EMP3 DBP NUP62 SNAR-A7 TEAD2 SNAR-A6 MIR6800 PPFIA3 CABP5 MIR6799 LOC105447645 TRPM4 FTL CD37 SNAR-C3 SNAR-A9 CGB5 SNAR-A10 SNAR-A11 CA11 SNAR-A8 TSKS NUCB1 ATF5 MIR4751 SPACA4 AP2A1 SNAR-A4 C19orf68 BCL2L12 CGB2 PTOV1-AS1 FUZ FCGRT DKKL1 FLT3LG SNAR-A3 MIR150 LIN7B RCN3 KCNA7 PLA2G4C-AS1 SNAR-G1 RASIP1 FAM83E SNAR-G2 PIH1D1 CPT1C SNAR-B2 SNORD33 SNORD35A PTH2 SEC1P RPL13A HRC AKT1S1 PTOV1 NTF4 SULT2B1 FGF21 GFY SNAR-A2 SNAR-A13 SNAR-B1 DHDH PLA2G4C PRR12 CCDC155 RPL18 MIR4749 PNKP CARD8-AS1
nsv833863	Chr.19:49479177 - 49629716 on Build GRCh38	Loss	SNORD32A SNORD35B NOSIP SNORD33 SNORD35A RPS11 RPL13A FCGRT PRR12 FLT3LG MIR150 RCN3 SNORD34 PRRG2
nsv833862	Chr.19:49448789 - 49570676 on Build GRCh38	Loss	ALDH16A1 SNORD32A PIH1D1 SNORD35B NOSIP SNORD33 SNORD35A RPS11 RPL13A FCGRT FLT3LG MIR150 RCN3 SNORD34
nsv1160655	Chr.19:49489110 - 49841830 on Build GRCh38	Deletion	SCAF1 ADM5 CPT1C NOSIP SNORD33 SNORD35A MIR6800 RRAS RPS11 RPL13A MIR6799 IRF3 PRMT1 MED25 SNORD34 PRRG2 SNORD32A TSKS AP2A1 MIR5088 BCL2L12 SNORD35B PTOV1-AS1 FUZ FCGRT PRR12 MIR150 RCN3

More Information

Additional Information:

For this assay, SNP(s) [rs79476680] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

calmodulin-related

Gene Ontology Categories:

Function(s)

calcium ion binding
protein binding