Genomic Map
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Target Gene Details
Entrez Gene ID: | 3978 |
Gene Name: | DNA ligase 1 |
Gene Aliases: |
- |
Location: |
Chr.19:48115445-48170603 on Build GRCh38 |
Assay Gene Location: | Within Intron 17 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| LIG1 | NM_000234.2 | NP_000225.1 | ||
| NM_001289063.1 | NP_001275992.1 | |||
| NM_001289064.1 | NP_001275993.1 | |||
| NM_001320970.1 | NP_001307899.1 | |||
| NM_001320971.1 | NP_001307900.1 | |||
| NR_110296.1 | ||||
| NR_135497.1 | ||||
| NR_135498.1 | ||||
| NR_135499.1 | ||||
| NR_135500.1 | ||||
| NR_135501.1 | ||||
| XM_017026809.1 | XP_016882298.1 | |||
| AB208791.1 | BAD92028.1 | |||
| AK225863.1 | ||||
| AK297296.1 | ||||
| AK300370.1 | ||||
| AK300607.1 | ||||
| AK314210.1 | ||||
| BC108318.1 | AAI08319.1 | |||
| BC110622.2 | AAI10623.1 | |||
| M36067.1 | AAA59518.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv833853 | Chr.19:47982539 - 48184317 on Build GRCh38 | Loss |
 PLA2G4C-AS1
CABP5
LIG1
BSPH1
ELSPBP1
C19orf68
PLA2G4C
|
| nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss |
SNAR-A4
SNAR-C5
ZNF114
CCDC114
TRPM4
LIG1
SNAR-C3
NUCB1-AS1
SIGLEC16
KCNJ14
SNORD34
PPP1R15A
TSKS
PLEKHA4
DKKL1
DHDH
FUT1
SNAR-A3
SNAR-A8
SNAR-A6
MIR4750
CGB1
GYS1
LOC101928295
BSPH1
CGB2
TULP2
SNAR-A7
ALDH16A1
SNAR-C4
LOC105372430
CABP5
PRR12
FCGRT
SULT2B1
FUZ
CPT1C
LHB
SNAR-C2
SCAF1
TMEM143
PTOV1-AS1
ELSPBP1
PTOV1
SNAR-A5
SNORD35B
RPL13A
PRRG2
SNAR-A13
SNAR-G2
PPFIA3
MIR4324
SNAR-A9
SNAR-A10
TEAD2
BAX
MIR4751
CA11
RUVBL2
RRAS
SNORD32A
MIR6799
ADM5
SPACA4
ATF5
NUCB1
SNAR-D
IRF3
PRMT1
C19orf68
FAM83E
NUP62
FLJ26850
SEC1P
SIGLEC11
VRK3
DBP
CGB8
BCL2L12
LOC105447645
SYNGR4
SNAR-B2
SNORD35A
EMP3
TBC1D17
CGB7
FTL
IZUMO1
SNAR-G1
FLT3LG
RPS11
KDELR1
PTOV1-AS2
LOC100287477
PNKP
SNAR-A11
SLC6A16
NTN5
HRC
GRIN2D
FUT2
PLA2G4C
CCDC155
MIR6800
MIR5088
SNORD33
MED25
CYTH2
GFY
RCN3
ZNF473
LMTK3
CGB5
FGF21
SNAR-A2
SPHK2
C19orf73
PLA2G4C-AS1
BCAT2
SNAR-C1
PTH2
CARD8-AS1
MIR4749
NOSIP
SNAR-A14
MAMSTR
KCNA7
MIR6798
CGB3
CD37
SNRNP70
PIH1D1
NTF4
LOC101059948
MIR150
SNAR-B1
CARD8
AKT1S1
HSD17B14
SNAR-A12
IL4I1
SLC17A7
AP2A1
RASIP1
RPL18
GRWD1
SNAR-A1
LIN7B
|
| esv34181 | Chr.19:48009377 - 48416682 on Build GRCh38 | Loss |
SYNGR4
EMP3
PLA2G4C-AS1
ZNF114
CCDC114
CARD8
LIG1
TMEM143
CARD8-AS1
ELSPBP1
C19orf68
KDELR1
CABP5
GRIN2D
PLA2G4C
|
Back To TopMore Information
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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