Hs04035615_cn

• Gene Symbol: ZGPAT
• Assay Reference Genome Location: Chr.20:63711558 on build GRCh38
• Cytoband: 20q13.33

Target Gene Details

• Entrez Gene ID: 84619
• Gene Name: zinc finger CCCH-type and G-patch domain containing
• Gene Aliases: GPATC6, GPATCH6, KIAA1847, ZC3H9, ZC3HDC9, ZIP
• Location: Chr.20:63707442-63736142 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
ZGPAT	NM_001083113.1			NP_001076582.1
	NM_001195653.1			NP_001182582.1
	NM_001195654.1			NP_001182583.1
	NM_032527.4			NP_115916.3
	NM_181485.2			NP_852150.2
	AB058750.3
	AK027878.1			BAB55426.1
	AK074961.1			BAC11317.1
	AK307368.1
	AK314726.1
	BC019338.1			AAH19338.1
	BC032612.1			AAH32612.1
	CV027894.1
	KU178806.1
	KU178807.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv953308	Chr.20:63650148 - 63831847 on Build GRCh38	Deletion	RTEL1 ARFRP1 RTEL1-TNFRSF6B TNFRSF6B LIME1 ZBTB46 ZGPAT STMN3 ZBTB46-AS1 SLC2A4RG
nsv1160690	Chr.20:63639552 - 63744287 on Build GRCh38	Deletion	RTEL1 ARFRP1 RTEL1-TNFRSF6B TNFRSF6B LIME1 ZBTB46 ZGPAT STMN3 SLC2A4RG
nsv428381	Chr.20:63583375 - 64334167 on Build GRCh38	Gain+Loss	RTEL1 ZNF512B TNFRSF6B GMEB2 LIME1 SAMD10 ABHD16B UCKL1 STMN3 SLC2A4RG PRPF6 MIR6813 ARFRP1 MIR941-1 MYT1 MIR941-3 OPRL1 ZBTB46 DNAJC5 LOC100505771 ZGPAT TPD52L2 UCKL1-AS1 MIR941-4 SOX18 MIR647 RTEL1-TNFRSF6B C20orf181 NPBWR2 TCEA2 PCMTD2 RGS19 LINC00176 MIR941-2 MIR941-5 MIR1914 LKAAEAR1 ZBTB46-AS1 LINC00266-1
nsv828801	Chr.20:63706624 - 63731055 on Build GRCh38	Loss	ARFRP1 ZGPAT
nsv470563	Chr.20:63486715 - 63793308 on Build GRCh38	Loss	RTEL1 RTEL1-TNFRSF6B TNFRSF6B GMEB2 LIME1 SRMS PTK6 STMN3 SLC2A4RG ARFRP1 FNDC11 HELZ2 ZBTB46 EEF1A2 LOC100505771 ZGPAT PPDPF
esv2758806	Chr.20:63470996 - 63745014 on Build GRCh38	Gain+Loss	RTEL1 RTEL1-TNFRSF6B TNFRSF6B GMEB2 LIME1 SRMS PTK6 STMN3 KCNQ2 SLC2A4RG ARFRP1 FNDC11 HELZ2 ZBTB46 EEF1A2 LOC100505771 ZGPAT PPDPF

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
negative regulation of epidermal growth factor-activated receptor activity
negative regulation of transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
protein binding
sequence-specific DNA binding
metal ion binding