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See other SMYD1 CNV Assays ›
Gene Symbol
SMYD1
Assay Reference Genome
Location

Chr.2:88076059 on build GRCh38
Cytoband
2p11.2
Assay ID Hs04634568_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 150572

Gene Name:

 SET and MYND domain containing 1

Gene Aliases:

 BOP, KMT3D, ZMYND18, ZMYND22

Location:

 Chr.2:88067780-88113384 on Build GRCh38

Assay Gene Location:

 Within Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SMYD1 NM_198274.3 NP_938015.1
XM_005264156.2 XP_005264213.1
AK091724.1 BAC03732.1
AL832035.1 CAI46139.1
AY518933.1 AAT44535.1
BC126191.1
BX647878.1 CAI46077.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
dgv61n16 Chr.2:87343737 - 90254660 on Build GRCh38 Deletion IGKV3-20 LOC107985911 RGPD2 THNSL2 IGKV2-26 IGKV1-5 PLGLB2 IGKV2-24 FABP1 LOC101927050 SMYD1 IGKV1D-13 IGKV2-29 IGKC LOC730268 EIF2AK3 IGKV1D-8 IGKV3D-15 MIR4435-1 MIR4436A KRCC1 MIR4780 FOXI3 LOC101928371 ANKRD36BP2 RPIA LINC00152 TEX37 IGK LOC101928403
dgv6947n54 Chr.2:87815738 - 88850700 on Build GRCh38 Gain EIF2AK3 MIR4436A RGPD2 KRCC1 MIR4780 THNSL2 FOXI3 LOC101928371 FABP1 ANKRD36BP2 SMYD1 RPIA TEX37 LOC101928403
nsv1072005 Chr.2:87360367 - 90256528 on Build GRCh38 Deletion IGKV3-20 LOC107985911 RGPD2 THNSL2 IGKV2-26 IGKV1-5 PLGLB2 IGKV2-24 FABP1 LOC101927050 SMYD1 IGKV1D-13 IGKV2-29 IGKC LOC730268 EIF2AK3 IGKV1D-8 IGKV3D-15 MIR4435-1 MIR4436A KRCC1 MIR4780 FOXI3 LOC101928371 ANKRD36BP2 RPIA LINC00152 TEX37 IGK LOC101928403
nsv1130752 Chr.2:87360364 - 90256525 on Build GRCh38 Deletion IGKV3-20 LOC107985911 RGPD2 THNSL2 IGKV2-26 IGKV1-5 PLGLB2 IGKV2-24 FABP1 LOC101927050 SMYD1 IGKV1D-13 IGKV2-29 IGKC LOC730268 EIF2AK3 IGKV1D-8 IGKV3D-15 MIR4435-1 MIR4436A KRCC1 MIR4780 FOXI3 LOC101928371 ANKRD36BP2 RPIA LINC00152 TEX37 IGK LOC101928403
nsv582384 Chr.2:87987149 - 88773214 on Build GRCh38 Loss EIF2AK3 RGPD2 KRCC1 MIR4780 THNSL2 FOXI3 LOC101928371 FABP1 ANKRD36BP2 SMYD1 RPIA TEX37 LOC101928403
nsv582386 Chr.2:88035188 - 89208087 on Build GRCh38 Loss IGKV3-20 EIF2AK3 MIR4436A KRCC1 MIR4780 THNSL2 IGKV2-26 IGKV1-5 FOXI3 LOC101928371 IGKV2-24 FABP1 ANKRD36BP2 SMYD1 RPIA IGKC TEX37 IGK LOC101928403
nsv582383 Chr.2:87915816 - 88527080 on Build GRCh38 Gain FOXI3 FABP1 SMYD1 RGPD2 KRCC1 TEX37 MIR4780 THNSL2

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More Information


Additional Information:

For this assay, SNP(s) [rs116827275] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Intronic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)


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