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See other SAPCD1-AS1 CNV Assays ›
Gene Symbol
SAPCD1-AS1
Assay Reference Genome
Location

Chr.6:31765587 on build GRCh38
Cytoband
6p21.33
Assay ID Hs06799092_cn
Size
Availability Made To Order
Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 104413891

Gene Name:

 SAPCD1 antisense RNA 1

Gene Aliases:

 C6orf26-AS1

Location:

 Chr.6:31764135-31765588 on Build GRCh38

Assay Gene Location:

 Overlaps - Intron 1
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
SAPCD1-AS1 NR_126423.1
BM509003.1

Target Gene Details

Entrez Gene ID:

 80737

Gene Name:

 von Willebrand factor A domain containing 7

Gene Aliases:

 C6orf27, G7c, NG37

Location:

 Chr.6:31764135-31777331 on Build GRCh38

Assay Gene Location:

 Within Exon 16
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
VWA7 NM_025258.2 NP_079534.2
XM_005249427.2 16 2999 XP_005249484.1
XM_017011327.1 15 3034 XP_016866816.1
XM_017011328.1 16 3145 XP_016866817.1
XM_017011329.1 14 2543 XP_016866818.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
nsv1126749 Chr.6:31457323 - 32594423 on Build GRCh38 Deletion C6orf10 SLC44A4 STK19 C4A LOC101929163 MIR1236 C6orf48 DDX39B-AS1 HCG26 AGPAT1 C4B APOM PRRC2A CYP21A1P SNORA38 CLIC1 VARS SKIV2L LTB TNF HCG23 LSM2 CYP21A2 ATP6V1G2-DDX39B MIR6721 SAPCD1 ATP6V1G2 SAPCD1-AS1 NCR3 DXO LY6G5B C6orf25 C6orf47 HSPA1B LY6G5C HLA-DRB6 HLA-DRB5 HSPA1L TNXA AGER C2-AS1 EHMT2 MSH5 EGFL8 NELFE PBX2 SNORD117 LST1 SNORD52 SNORD84 LY6G6C TNXB NEU1 LTA BAG6 DDX39B MCCD1 GPANK1 HSPA1A PRRT1 NFKBIL1 LOC102725068 MICB LOC100507547 LY6G6E NOTCH4 PPT2-EGFL8 ABHD16A MSH5-SAPCD1 DDAH2 FKBPL RNF5 LY6G6F SNORD48 VWA7 HLA-DRB1 LOC100287329 AIF1 LY6G6D HCP5 C2 MIR6833 BTNL2 ZBTB12 HLA-DRA GPSM3 PPT2 MIR6832 CFB MIR4646 CSNK2B ATF6B
esv2763547 Chr.6:31748105 - 31770701 on Build GRCh38 Loss SAPCD1-AS1 MSH5-SAPCD1 MSH5 VWA7 SAPCD1
nsv1073969 Chr.6:31456422 - 33480523 on Build GRCh38 Deletion HSD17B8 HCG26 AGPAT1 SLC39A7 APOM PRRC2A VPS52 SNORA38 CLIC1 CUTA VARS SKIV2L LTB HCG23 SYNGAP1 MIR5004 PSMB8-AS1 LSM2 PFDN6 RXRB SAPCD1 ATP6V1G2 LOC100294145 SAPCD1-AS1 NCR3 DAXX LY6G5B C6orf25 HLA-DRB5 HSPA1L TNXA EHMT2 MSH5 HLA-DOB SNORD117 MIR219A1 LY6G6C TNXB PSMB8 NEU1 BAG6 DDX39B HSPA1A PRRT1 MICB LOC100507547 PHF1 HLA-DOA HCG24 HCG25 RGL2 PPT2-EGFL8 MSH5-SAPCD1 ZBTB22 FKBPL RNF5 VWA7 HLA-DRB1 TAP1 LY6G6D HLA-DQB1-AS1 PSMB9 C2 CSNK2B ATF6B HLA-DPA1 C6orf10 SLC44A4 STK19 HLA-DQB2 C4A LOC101929163 MIR1236 C6orf48 DDX39B-AS1 KIFC1 HLA-DQA1 C4B MIR3135B TAPBP HLA-DMB CYP21A1P PPP1R2P1 HLA-DQA2 TNF COL11A2 CYP21A2 ATP6V1G2-DDX39B MIR6721 MIR6873 DXO ZBTB9 C6orf47 HSPA1B LY6G5C HLA-DPB2 HLA-DRB6 AGER C2-AS1 RPS18 EGFL8 HLA-DQB1 NELFE PBX2 LST1 SNORD52 WDR46 SNORD84 TAP2 LTA BRD2 RING1 MCCD1 GPANK1 NFKBIL1 LOC102725068 MIR6834 LY6G6E HLA-DPB1 NOTCH4 ABHD16A DDAH2 HLA-DMA LY6G6F SNORD48 LOC100287329 AIF1 HCP5 B3GALT4 MIR6833 BTNL2 ZBTB12 HLA-DRA GPSM3 PPT2 MIR6832 CFB MIR4646
dgv10403n54 Chr.6:31312324 - 32049763 on Build GRCh38 Loss SLC44A4 STK19 C4A MIR1236 C6orf48 HLA-B DDX39B-AS1 HCG26 C4B APOM PRRC2A CYP21A1P SNORA38 CLIC1 VARS MICA SKIV2L LTB TNF LSM2 CYP21A2 ATP6V1G2-DDX39B SAPCD1 ATP6V1G2 SAPCD1-AS1 NCR3 DXO LY6G5B C6orf25 C6orf47 HSPA1B LY6G5C HSPA1L TNXA C2-AS1 EHMT2 MSH5 NELFE SNORD117 LST1 SNORD52 SNORD84 LY6G6C TNXB NEU1 LTA BAG6 DDX39B MCCD1 GPANK1 HSPA1A NFKBIL1 LOC102725068 MICB LY6G6E MIR6891 ABHD16A MSH5-SAPCD1 DDAH2 LY6G6F SNORD48 VWA7 LOC100287329 AIF1 LY6G6D HCP5 C2 ZBTB12 MIR6832 CFB MIR4646 CSNK2B
nsv1112900 Chr.6:31455323 - 33480423 on Build GRCh38 Deletion HSD17B8 HCG26 AGPAT1 SLC39A7 APOM PRRC2A VPS52 SNORA38 CLIC1 CUTA VARS SKIV2L LTB HCG23 SYNGAP1 MIR5004 PSMB8-AS1 LSM2 PFDN6 RXRB SAPCD1 ATP6V1G2 LOC100294145 SAPCD1-AS1 NCR3 DAXX LY6G5B C6orf25 HLA-DRB5 HSPA1L TNXA EHMT2 MSH5 HLA-DOB SNORD117 MIR219A1 LY6G6C TNXB PSMB8 NEU1 BAG6 DDX39B HSPA1A PRRT1 MICB LOC100507547 PHF1 HLA-DOA HCG24 HCG25 RGL2 PPT2-EGFL8 MSH5-SAPCD1 ZBTB22 FKBPL RNF5 VWA7 HLA-DRB1 TAP1 LY6G6D HLA-DQB1-AS1 PSMB9 C2 CSNK2B ATF6B HLA-DPA1 C6orf10 SLC44A4 STK19 HLA-DQB2 C4A LOC101929163 MIR1236 C6orf48 DDX39B-AS1 KIFC1 HLA-DQA1 C4B MIR3135B TAPBP HLA-DMB CYP21A1P PPP1R2P1 HLA-DQA2 TNF COL11A2 CYP21A2 ATP6V1G2-DDX39B MIR6721 MIR6873 DXO ZBTB9 C6orf47 HSPA1B LY6G5C HLA-DPB2 HLA-DRB6 AGER C2-AS1 RPS18 EGFL8 HLA-DQB1 NELFE PBX2 LST1 SNORD52 WDR46 SNORD84 TAP2 LTA BRD2 RING1 MCCD1 GPANK1 NFKBIL1 LOC102725068 MIR6834 LY6G6E HLA-DPB1 NOTCH4 ABHD16A DDAH2 HLA-DMA LY6G6F SNORD48 LOC100287329 AIF1 HCP5 B3GALT4 MIR6833 BTNL2 ZBTB12 HLA-DRA GPSM3 PPT2 MIR6832 CFB MIR4646
dgv10404n54 Chr.6:31312550 - 32516591 on Build GRCh38 Loss C6orf10 SLC44A4 STK19 C4A LOC101929163 MIR1236 C6orf48 HLA-B DDX39B-AS1 HCG26 AGPAT1 C4B APOM PRRC2A CYP21A1P SNORA38 CLIC1 VARS MICA SKIV2L LTB TNF HCG23 LSM2 CYP21A2 ATP6V1G2-DDX39B MIR6721 SAPCD1 ATP6V1G2 SAPCD1-AS1 NCR3 DXO LY6G5B C6orf25 C6orf47 HSPA1B LY6G5C HSPA1L TNXA AGER C2-AS1 EHMT2 MSH5 EGFL8 NELFE PBX2 SNORD117 LST1 SNORD52 SNORD84 LY6G6C TNXB NEU1 LTA BAG6 DDX39B MCCD1 GPANK1 HSPA1A PRRT1 NFKBIL1 LOC102725068 MICB LOC100507547 LY6G6E MIR6891 NOTCH4 PPT2-EGFL8 ABHD16A MSH5-SAPCD1 DDAH2 FKBPL RNF5 LY6G6F SNORD48 VWA7 LOC100287329 AIF1 LY6G6D HCP5 C2 MIR6833 BTNL2 ZBTB12 HLA-DRA GPSM3 PPT2 MIR6832 CFB MIR4646 CSNK2B ATF6B

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More Information


Set Membership:

 Intragenic Exonic Non-exonic DGV Variation

Gene Ontology Categories:

Function(s) Process(es)


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