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Gene Symbol
ALYREF
Assay Reference Genome
Location

Chr.17:81888116 on build GRCh38
Cytoband
17q25.3
Assay ID Hs07502934_cn
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Catalog # 4400291
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Assay Details

Target Gene Details

Entrez Gene ID:

 10189

Gene Name:

 Aly/REF export factor

Gene Aliases:

 ALY, ALY/REF, BEF, REF, THOC4

Location:

 Chr.17:81887835-81891622 on Build GRCh38

Assay Gene Location:

 Overlaps Intron 5 - Exon 6
Gene Symbol Transcript Accession Exon Location Assay Transcript Location Protein ID
ALYREF NM_005782.3 NP_005773.3
AF047002.1 AAD09608.1
AF086513.1
BC052302.1 AAH52302.1
BU624466.1

Target Copy Number Variation Details

DGV Version:

 Release date: 2016-05-15, GRCh GRCh38
Target
Variation		 Location CNV
Subtype		 Genes
esv33475 Chr.17:81871555 - 81891535 on Build GRCh38 Gain+Loss ALYREF ANAPC11
esv3641407 Chr.17:81858294 - 81890680 on Build GRCh38 Gain ALYREF P4HB ARHGDIA
nsv952392 Chr.17:81885825 - 82065724 on Build GRCh38 Deletion DUS1L ALYREF SIRT7 STRA13 MAFG ASPSCR1 MYADML2 PCYT2 ANAPC11 RFNG PYCR1 NPB RAC3 MAFG-AS1 DCXR LRRC45 NOTUM GPS1
nsv428351 Chr.17:81152631 - 83064073 on Build GRCh38 Gain SIRT7 MAFG CCDC57 RAB40B SLC16A3 MIR4525 LOC105371944 PPP1R27 AATK-AS1 NARF MIR6786 GCGR FASN TEPSIN SNORD134 B3GNTL1 TMEM105 FOXK2 LOC100130370 MYADML2 MIR4740 MRPL12 OXLD1 PYCR1 LOC101929511 C17orf89 LINC00482 HEXDC DCXR LOC105376791 P4HB LOC105376790 C17orf62 ARHGDIA BAHCC1 ALYREF HGS NPLOC4 PCYT2 ACTG1 ANAPC11 AATK FN3KRP SECTM1 RFNG FN3K CSNK1D RAC3 CCDC137 MAFG-AS1 UTS2R MIR3186 PDE6G NOTUM TSPAN10 DUS1L LOC105371925 STRA13 ASPSCR1 TBCD CD7 CEP131 TEX19 ARL16 NPB FAAP100 ZNF750 SLC38A10 MCRIP1 OGFOD3 WDR45B FSCN2 LOC101929552 MIR6787 LRRC45 GPS1 SLC25A10
nsv470620 Chr.17:81516973 - 82064485 on Build GRCh38 Loss ALYREF SIRT7 MAFG HGS NPLOC4 PCYT2 ANAPC11 PPP1R27 RFNG MIR6786 RAC3 GCGR CCDC137 MAFG-AS1 PDE6G NOTUM TSPAN10 DUS1L STRA13 ASPSCR1 MYADML2 MRPL12 OXLD1 PYCR1 ARL16 NPB FAAP100 MCRIP1 FSCN2 DCXR LRRC45 P4HB GPS1 SLC25A10 ARHGDIA
nsv833569 Chr.17:81838937 - 82011412 on Build GRCh38 Loss ALYREF SIRT7 MAFG ASPSCR1 MYADML2 PCYT2 ANAPC11 PYCR1 NPB MAFG-AS1 NOTUM P4HB ARHGDIA
esv21913 Chr.17:81828123 - 83103548 on Build GRCh38 Gain+Loss SIRT7 MAFG CCDC57 RAB40B SLC16A3 MIR4525 LOC105371944 PPP1R27 NARF FASN SNORD134 B3GNTL1 FOXK2 MYADML2 PYCR1 LOC101929511 HEXDC DCXR LOC105376791 P4HB LOC105376790 C17orf62 ARHGDIA ALYREF PCYT2 ANAPC11 FN3KRP SECTM1 RFNG FN3K CSNK1D RAC3 METRNL MAFG-AS1 UTS2R NOTUM DUS1L STRA13 ASPSCR1 TBCD CD7 TEX19 NPB ZNF750 MCRIP1 OGFOD3 WDR45B LOC101929552 MIR6787 LRRC45 GPS1

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More Information


Additional Information:

For this assay, SNP(s) [rs145890926] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

Set Membership:

 Intragenic Non-exonic DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)


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