Hs03296914_s1

• Gene Symbol: PCDHB17P
• Gene Name: protocadherin beta 17 pseudogene
• Gene Aliases: ME4, PCDH-psi1, PCDHB17
• Chromosome Location: Chr.5: 141155999 - 141158409 on Build GRCh38
• Species: Human
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: PCDHB17P
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_001280.1		1	947		150
GenBank mRNA	AF217751.1	-	1	950		150

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	AF152527.3	-	1	947		Chr. 5 - 141155999 - 141158409 [+] on Build GRCh38	150

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	protocadherin beta 6	PCDHB6	PCDH-BETA6	-2.7kb	Sense	Chr. 5 - 141150022 - 141153287 on NCBI Build GRCh38
Downstream	protocadherin beta 7	PCDHB7	PCDH-BETA7	14.2kb	Sense	Chr. 5 - 141172621 - 141176376 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500008878.hg.1
This assay targets the same location as HTA transcript cluster(s) TC05000748.hg.1

• Set Membership: Amplicon length greater than or equal to 101, Detect Genomic DNA, Homo sapiens, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

cadherin

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR05010775.hg.1	TC05000748.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR05010775.hg.1	ENST00000539533.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05010775.hg.1	NR_001280.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0500008878.hg.1	ENST00000539533.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008878.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008878.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008878.hg.1	NR_001280.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	ENST00000539533.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	NR_001280.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	ENST00000539533.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	NR_001280.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500161736.hg.1	TC0500008878.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0500008878.hg.1	ENST00000539533.3	Ensembl
Affymetrix Human Clariom D Assay	TC0500008878.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008878.hg.1	ENST00000623466.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008878.hg.1	NR_001280.1	Refseq