Mm00479849_g1

• Gene Symbol: Paf1
• Gene Name: Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)
• Gene Aliases: 5730511K23Rik, AA675045
• Chromosome Location: Chr.7: 28392996 - 28399383 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Paf1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019458.3	NP_062331.2	1 - 2	265		72
GenBank mRNA	AB041615.1	-	1 - 2	283		72
	AK017762.1	-	1 - 2	335		72
	AK134857.1	-	1 - 2	278		72
	AK148538.1	-	1 - 2	300		72
	AK151665.1	-	1 - 2	312		72
	AK152778.1	-	1 - 2	281		72
	AK152836.1	-	1 - 2	312		72
	BC010317.1	-	1 - 2	220		72
	BC029843.1	-	1 - 2	265	2651081	72
	BC083337.1	-	1 - 2	246	5701517	72

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000498.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Paf1

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
endodermal cell fate commitment
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA polyadenylation
histone monoubiquitination
Wnt signaling pathway
nucleosome positioning
stem cell population maintenance
positive regulation of histone methylation
positive regulation of mRNA 3'-end processing
positive regulation of transcription elongation from RNA polymerase II promoter
histone H2B ubiquitination
protein localization to nucleus
negative regulation of myeloid cell differentiation
positive regulation of transcription from RNA polymerase II promoter
cellular response to lipopolysaccharide

Function(s)

RNA polymerase II core binding
chromatin binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0700004018.mm.1	TC0700000498.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700004018.mm.1	NM_019458.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004018.mm.1	NM_019458.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004020.mm.1	TC0700000498.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700004020.mm.1	NM_019458.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004020.mm.1	NM_019458.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004019.mm.1	TC0700000498.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700004019.mm.1	NM_019458.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004019.mm.1	NM_019458.3	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004022.mm.1	TC0700000498.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700004022.mm.1	NM_019458.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700004022.mm.1	NM_019458.3	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	814267	-	-