Rn00584322_s1 Best Coverage

• Gene Symbol: Sox11
• Gene Name: SRY (sex determining region Y)-box 11
• Gene Aliases: -
• Chromosome Location: Chr.6: 46629967 - 46631988 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox11
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053349.1	NP_445801.1	1	1450		87
GenBank mRNA	AJ004858.1	-	1	1450		87

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox11

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
skeletal system development
kidney development
neural tube formation
lens morphogenesis in camera-type eye
outflow tract morphogenesis
cardiac ventricle formation
noradrenergic neuron differentiation
transcription, DNA-templated
transcription from RNA polymerase II promoter
translation
cell proliferation
positive regulation of cell proliferation
positive regulation of gene expression
negative regulation of gene expression
oligodendrocyte development
glial cell proliferation
neural crest cell development
regulation of transforming growth factor beta receptor signaling pathway
spinal cord development
glial cell development
neuron differentiation
positive regulation of BMP signaling pathway
positive regulation of hippo signaling
skeletal muscle cell differentiation
positive regulation of neuron differentiation
positive regulation of osteoblast differentiation
positive regulation of ossification
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of hormone secretion
sympathetic nervous system development
embryonic digestive tract morphogenesis
embryonic skeletal system morphogenesis
negative regulation of lymphocyte proliferation
positive regulation of neurogenesis
hard palate development
soft palate development
limb bud formation
negative regulation of glial cell proliferation
ventricular septum morphogenesis
lung morphogenesis
negative regulation of cell death
neuroepithelial cell differentiation
eyelid development in camera-type eye
somite development
cornea development in camera-type eye
closure of optic fissure
signal transduction involved in cell cycle checkpoint
positive regulation of stem cell proliferation
negative regulation of transcription regulatory region DNA binding
positive regulation of lens epithelial cell proliferation

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription coactivator activity
enhancer sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
translation factor activity, RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P073944	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P073944	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P073944	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P073944	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P545498	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	103936	-	-
Agilent Rat cDNA Microarray (G4105A)	702126295	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10889418	-	-
Affymetrix Rat Gene 1.0 ST Array	10889417	-	-
Affymetrix Rat Gene 1.0 ST Array	10889416	-	-
Affymetrix Rat Gene 1.1 ST Array	10889415	-	-
Rat Genome 230 2.0 Array	1387275_at	-	-
Rat Genome 230 2.0 Array	1381303_PM_at	-	-
Rat Genome 230 2.0 Array	1387275_PM_at	-	-
Rat Genome 230 2.0 Array	1381303_at	-	-
Affymetrix HT Rat Focus Array	1387275_PM_at	-	-
Affymetrix HT Rat Focus Array	1387275_at	-	-
Affymetrix Rat Clariom S Assay	PSR0600016162.rn.1	TC0600002241.rn.1	RTA TC
Rat Expression Set 230	1387275_PM_at	-	-
Rat Expression Set 230	1387275_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10889415	-	-
Rat Genome U34 Set	AJ004858_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22241840	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359646	-	-
RatRef-12 Expression BeadChip	ILMN_49979	-	-