Assay Details

Gene Symbol: ATP23
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001320408.1	NP_001307337.1	1	109		90
	NM_001320409.1	NP_001307338.1	1	109		90
	NM_001320410.1	NP_001307339.1	1	109		90
	NM_033276.3	NP_150592.1	1	109		90
GenBank mRNA	BC033881.1	-	1	49		90
	BM544500.1	-	1	68		90
	BU601924.1	-	1	112		90
	DA711361.1	-	1	72		90

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DB001162.1	-	1	56	Chr. 12 - 57941557 - 57942115 [+] on Build GRCh38	90
GenBankmRNA	BQ437666.1	-	1	50	Chr. 12 - 57941563 - 57956849 [+] on Build GRCh38	90
GenBankmRNA	BI825524.1	-	1	93	Chr. 12 - 57941520 - 57956863 [+] on Build GRCh38	90
GenBankmRNA	HY042462.1	-	1	63	Chr. 12 - 57941550 - 57947080 [+] on Build GRCh38	90
GenBankmRNA	BM554419.1	-	1	49	Chr. 12 - 57941564 - 57942316 [+] on Build GRCh38	90
GenBankmRNA	DB455081.1	-	1	97	Chr. 12 - 57941516 - 57947062 [+] on Build GRCh38	90
GenBankmRNA	BF966159.1	-	1	60	Chr. 12 - 57941554 - 57956724 [+] on Build GRCh38	90
GenBankmRNA	HY002889.1	-	1	82	Chr. 12 - 57941533 - 57941805 [+] on Build GRCh38	90
GenBankmRNA	DB453276.1	-	1	87	Chr. 12 - 57941527 - 57947080 [+] on Build GRCh38	90

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC100506844	LOC100506844		-5.4kb	Anti-sense	Chr. 12 - 57931449 - 57936164 on NCBI Build GRCh38
Downstream	uncharacterized LOC105369785	LOC105369785		145.6kb	Sense	Chr. 12 - 58087892 - 58093362 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1200007906.hg.1
This assay targets the same location as HTA transcript cluster(s) TC12000547.hg.1

Additional Information:

This assay is in the 5'UTR region of the BC033881.1,NM_001320408.1,NM_001320409.1,NM_001320410.1,NM_033276.3 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length between 86 and 100

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene ATP23

Panther Classification:

Molecular Function -

metalloprotease

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR12007362.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12007362.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12007362.hg.1	TC12000547.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12007361.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR12007361.hg.1	NM_033276.3	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR12007361.hg.1	TC12000547.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158011.hg.1	TC1200007906.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158012.hg.1	TC1200007906.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000546709.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	TC1200007906.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000300145.3	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000549257.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	ENST00000551997.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	NM_033276.3	Refseq
Affymetrix Human Clariom D Assay	PSR1200158013.hg.1	TC1200007906.hg.1	Clariom D TC

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