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See other HMGCL GE Assays ›
Gene Symbol:
Hmgcl
Gene Name:
3-hydroxymethyl-3-methylglutaryl-CoA lyase
Gene Aliases:
-
Chromosome Location:
Chr.5: 154294841 - 154308582 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00577753_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Hmgcl
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_024386.1 NP_077362.1 1 - 2 75 94
GenBank mRNA BC061797.1 - 1 - 2 77 5598033 94
FQ209392.1 - 1 - 2 73 94
FQ209616.1 - 1 - 2 79 94
FQ234382.1 - 1 - 2 73 94
Y10054.1 - 1 - 2 75 94

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001692.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hmgcl

Panther Classification:

Molecular Function -

lyase

Gene Ontology Categories:

Function(s) Process(es)

liver development
acyl-CoA metabolic process
mitochondrion organization
response to nutrient
response to starvation
ketone body biosynthetic process
protein tetramerization
response to fatty acid
fatty-acyl-CoA binding
magnesium ion binding
hydroxymethylglutaryl-CoA lyase activity
receptor binding
manganese ion binding
carboxylic acid binding
protein homodimerization activity
metal ion binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P527253 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 318476 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 786405 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 186062 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 756048 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 653992 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 828184 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 749076 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 644218 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 1568 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 172107 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P527253 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P527253 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P527253 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P527253 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 67276 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 7070 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10872951 - -
Affymetrix Rat Gene 1.0 ST Array 10872953 - -
Affymetrix Rat Gene 1.0 ST Array 10872957 - -
Affymetrix Rat Gene 1.0 ST Array 10872950 - -
Affymetrix Rat Gene 1.0 ST Array 10872955 - -
Affymetrix Rat Gene 1.0 ST Array 10872952 - -
Affymetrix Rat Gene 1.0 ST Array 10872954 - -
Affymetrix Rat Gene 1.0 ST Array 10872956 - -
Affymetrix Rat Gene 1.0 ST Array 10872958 - -
Affymetrix Rat Gene 1.1 ST Array 10872949 - -
Rat Genome 230 2.0 Array 1367767_PM_at - -
Rat Genome 230 2.0 Array 1367767_at - -
Affymetrix HT Rat Focus Array 1367767_PM_at - -
Affymetrix HT Rat Focus Array 1367767_at - -
Affymetrix Rat Clariom S Assay PSR0500012296.rn.1 TC0500001692.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0500012297.rn.1 TC0500001692.rn.1 RTA TC
Rat Expression Set 230 1367767_at - -
Rat Expression Set 230 1367767_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10872949 - -
Rat Genome U34 Set rc_AI171090_at - -
Rat Genome U34 Set rc_AI171090_g_at - -
Rat Genome U34 Set rc_AA945052_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21338712 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1371702 - -
RatRef-12 Expression BeadChip ILMN_56808 - -

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