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See other PCMTD1 GE Assays ›
Gene Symbol:
Pcmtd1
Gene Name:
protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
Gene Aliases:
RGD1307986
Chromosome Location:
Chr.5: 12132657 - 12204376 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01442891_m1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Pcmtd1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001257345.1 NP_001244274.1 4 - 5 824 101
XM_008763511.1 XP_008761733.1 6 - 7 2024 101
XM_008763512.1 XP_008761734.1 5 - 6 1914 101
XM_008763513.1 XP_008761735.1 6 - 7 1979 101
XM_008763514.1 XP_008761736.1 5 - 6 1869 101
XM_008763515.1 XP_008761737.1 4 - 5 1980 101

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500002203.rn.1

Set Membership:

Amplicon length greater than or equal to 101 3' Most Recommended Assay Rattus norvegicus Probe spans exons

Panther Classification:

Molecular Function -

methyltransferase

Gene Ontology Categories:

Function(s) Process(es)

protein methylation
protein-L-isoaspartate (D-aspartate) O-methyltransferase activity

MicroArray Probes:

Agilent Affymetrix

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P077940 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P077940 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P077940 - -
Array Name Probe IDs Targets Target Type
Rat Genome 230 2.0 Array 1393198_at - -
Rat Genome 230 2.0 Array 1396864_PM_at - -
Rat Genome 230 2.0 Array 1378565_at - -
Rat Genome 230 2.0 Array 1393198_PM_at - -
Rat Genome 230 2.0 Array 1377742_PM_at - -
Rat Genome 230 2.0 Array 1396864_at - -
Rat Genome 230 2.0 Array 1377742_at - -
Rat Genome 230 2.0 Array 1378565_PM_at - -
Affymetrix HT Rat Focus Array 1393198_PM_at - -
Affymetrix HT Rat Focus Array 1393198_at - -
Affymetrix Rat Clariom S Assay PSR0500016762.rn.1 TC0500002203.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0500016766.rn.1 TC0500002203.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0500016765.rn.1 TC0500002203.rn.1 RTA TC
Rat Expression Set 230 1378565_at - -
Rat Expression Set 230 1378565_PM_at - -
Rat Expression Set 230 1396864_PM_at - -
Rat Expression Set 230 1393198_at - -
Rat Expression Set 230 1396864_at - -
Rat Expression Set 230 1377742_at - -
Rat Expression Set 230 1377742_PM_at - -
Rat Expression Set 230 1393198_PM_at - -
Rat Genome U34 Set S63519_s_at - -
Rat Genome U34 Set rc_AA849012_at - -

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